PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0022s0175.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 349aa    MW: 38220.5 Da    PI: 5.2369
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0022s0175.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.92.4e-102743141055
                          HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Kalax.0022s0175.1.p 274 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 314
                          9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-14264331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.437264313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-12269324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-11270319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.42E-12273318No hitNo description
PfamPF000101.3E-7274314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MMSDGEWDSC VGIFLNDDAG FMLHQLFNDE VGKGSCSSSV APASWSSVEH NTNLAEANQS  60
FFPFFTNSCP LSSHYDLSHH CQVGVVPSQT HEKYYVTESD DTRQLNNTGF PVQSCVMDVD  120
VSPVPSFSDA IGEEDPTFLN NLELCQVQPD MLTSVPTSQM GLKRKAENSA FQSAQRDIIS  180
AENPTKKSRA MKDGGSGGKS KTQSKKNLKT SSGGSDDEAI YNSSCKQMSG SYNSEDDSNA  240
GTSSDSKLVA SNDQKGKKTA RRGSAIDPQS LYARKRRERI NERLRILQNL VPNGTKVDIS  300
TMLEEAVHYV KFLQTQIKLL SSDDMWMYAP IAFNGVDIGL DRKISQIL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.15e-38bHLH family protein