PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0022s0197.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 338aa    MW: 37577 Da    PI: 6.9639
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0022s0197.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.3e-10224272355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++i +++  L+el+P +    +k   Ka++L++ ++Y++sLq
  Kalax.0022s0197.1.p 224 SSHSLAERARREKISQRMRLLQELVPGC----NKVTGKAAMLKEIINYVQSLQ 272
                          58*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.97E-17218290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.94E-10219276No hitNo description
Gene3DG3DSA:4.10.280.102.9E-17221289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.421221271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-7224272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-10227277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MSDYDASSGS RSQNDRTDNL MKFSCSGWDP FVFMSQSANL GAASSHLAAN QGTSSSFHHH  60
RSSSDAVTEL PCVESLLTCP SEMVGPFGVY PQMEEIASTD CFRRCQPKMG TGSLFVCSAT  120
ADCADDCEDY GDGPNRSKRN FDSFKVNPPE NVGEVEQQMN HQPGRGSALR KERNHKKLSI  180
GRHLCDGLDE KQPPSNVKES SQVRKESSKE EYVHVRARRG QATSSHSLAE RARREKISQR  240
MRLLQELVPG CNKVTGKAAM LKEIINYVQS LQQQVEFLSM KLAAVNPQLN IHCIEQVVSN  300
EVSCNMTSYL YNQHPAAQFH HWTPDFTDNV LQNLPPM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023872654.13e-62transcription factor bHLH74
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.13e-47bHLH family protein