PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0022s0209.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 461aa    MW: 47052.7 Da    PI: 6.3194
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0022s0209.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.22.8e-202167349
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         ie+k  r +tfskR++gi+KKA+E+Sv+C+a+v+ i+fs+ gk y +
  Kalax.0022s0209.1.p 21 IEDKEDRVITFSKRKAGIFKKASEISVMCGAKVLFILFSPVGKAYSF 67
                         9******************************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.391171IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-271170IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.07E-241297IPR002100Transcription factor, MADS-box
CDDcd002651.78E-301286No hitNo description
PRINTSPR004042.9E-161333IPR002100Transcription factor, MADS-box
PfamPF003193.4E-202167IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-163348IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-164869IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MAAVDTKKLT KGRQKIQMRL IEDKEDRVIT FSKRKAGIFK KASEISVMCG AKVLFILFSP  60
VGKAYSFGHP SVKSVADKFL GREESDGGKQ IRQILENHLN KRLQKLVLHH FVAKSELEAA  120
CEQVSALAVA MKFENKGWWE ANVSAMSSRE EVEQVMKSLS DFEVALTNHF EQKNYNAQMT  180
SWTGGNNLPD VGAFGGFESS FGGVSDAGLA AVGYGGALGQ GSDGFSLPAA GNYGGVLGQD  240
SGFSLPTAGN YGGFPGQGND NFSLPVAGNH GGFPGQGNDN FSLPAAGNYG GALGQDNGFS  300
WPDAGNHGNA LGPGTGFSLP AAGNYGGALG HDNVFSLPVA GNYGGALGHD SGFSLPDGGT  360
YGGALGQGSS HFSLPAGGYG GTPGQGSDHF NFPAVGYGGS GFSVPTTDYG GTAGPSEGSS  420
SGGTHNGGNF GAGLYGAGGY GGSFMDGGAP HPASDFRRPY *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.16e-27AGAMOUS-like 64