PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0023s0004.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Trihelix
Protein Properties Length: 683aa    MW: 77381.8 Da    PI: 7.6292
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0023s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix37.94.8e-12160215260
             trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkr 60 
                          W+++ev aL+++r++ e++          We+vs+k+++ gf+rs+k+Ckek+e+ +k 
  Kalax.0023s0004.1.p 160 WSNEEVVALLRIRSSSETSWFPP---DFTWEHVSRKLAAIGFKRSAKTCKEKFEEESKT 215
                          **************999887655...699*************************98874 PP
2trihelix89.92.8e-28561656186
             trihelix   1 rWtkqevlaLiearr.........emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcp 80 
                          rW++++vlaLi++r          + e++ +++++++plWe++s+km++ g++rs+k+Ckekwen+nk+++k+k+++ ++ +s++s+tcp
  Kalax.0023s0004.1.p 561 RWPRDQVLALINLRCslltnkngdNEERDEGNKQQAAPLWERISRKMSQLGYQRSAKRCKEKWENINKYFRKTKDNNVNKkRSNDSRTCP 650
                          8*************966666554333333334569*****************************************9888579******* PP

             trihelix  81 yfdqle 86 
                          yf+ql 
  Kalax.0023s0004.1.p 651 YFHQLS 656
                          ****96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.7156215IPR001005SANT/Myb domain
PfamPF138373.6E-8159239No hitNo description
PROSITE profilePS500905.982160213IPR017877Myb-like domain
PROSITE profilePS500906.179554627IPR017877Myb-like domain
SMARTSM007172.5558629IPR001005SANT/Myb domain
PfamPF138379.4E-19560658No hitNo description
CDDcd122031.81E-22561634No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MFDGMHNQDQ LFHQFISFSS PSSSRPPPLP SSLHHQQISS PFPASFPVAS PPPIIPPPPP  60
PNQSIQFSDL FHRPTNLPSF HHLNPAPSSH NLISSKQYTS DQHTNSNSIS DVLEAQVHPK  120
DEVGLIRSLF PRAAASSSSL LVERERPSSS PPTLHQHEFW SNEEVVALLR IRSSSETSWF  180
PPDFTWEHVS RKLAAIGFKR SAKTCKEKFE EESKTCFDTF NNRVISDRIS YRIFSELENI  240
CGRDDNNAEK SAIQLQANDR EEDPIININN HQDMQAEEEE GIACENKANT RCNVFEEDAN  300
CVSPAIIIQQ YSQREQLECR EKVMKAKAKK KKKKIRRNKQ EHKFQIMKGL CEGLVNKMMT  360
QQEELHNKIL EDLLKRDEEN KAREEAWKRM EVERLNTELE IRAQEQAIAG DRQAAIIDLL  420
GTTTTSATSH ESRRGIIDAN IVAHLLKPIP HMPTKVITQS HDQNPPPPDQ PPCPNLQTLI  480
AHEALEPPQT PTSTIEPHIS NPPACLPASY STTPADSSGG RSASAQLICY PKPSTKKAII  540
QQPNNNSRAG ILSEEDQHGV RWPRDQVLAL INLRCSLLTN KNGDNEERDE GNKQQAAPLW  600
ERISRKMSQL GYQRSAKRCK EKWENINKYF RKTKDNNVNK KRSNDSRTCP YFHQLSQLYE  660
QGTLTAPSHH QTSLLENGQN KM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1328336KKKKKKIRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.15e-65Trihelix family protein