PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0023s0024.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

GRF

Protein Properties

Length: 352aa MW: 39097.3 Da PI: 8.3163

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0023s0024.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	75.8	4.6e-24	88	132	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++ +++k+CE+H+hrg++rsrk++e+ Kalax.0023s0024.1.p 88 DQEPGRCRRTDGKKWRCSKEAFPDSKYCEKHMHRGKNRSRKPVEQ 132 689***************************************997 PP
2	QLQ	48.1	3.5e-17	22	56	2	36
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +F+a+Q+q+L Q+l++K++a+++PvPp+Ll+ i+ Kalax.0023s0024.1.p 22 PFSASQWQELGEQALIFKHMASGVPVPPDLLFTIR 56 8******************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	9.5E-9	21	57	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.5E-12	22	56	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	19.459	22	57	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.512	88	132	IPR014977	WRC domain
Pfam	PF08879	4.0E-20	90	131	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048366	Biological Process	leaf development
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MIMNGRASAG AGGVNGGGCR FPFSASQWQE LGEQALIFKH MASGVPVPPD LLFTIRRSLD 60 SNHLFPHPAA APLIGWNGFE MGLGRKIDQE PGRCRRTDGK KWRCSKEAFP DSKYCEKHMH 120 RGKNRSRKPV EQQVVNKSFS TPTQHSLNNT NTNTITLTTN CSKSHQSSSV ASDNHLSPPA 180 CAYYNISHPY HLHSSSSSNS RFDSTHILLH SASYYRSRYD GSSNHGSVLK EVVDEQSQSQ 240 SQSQSQSLLN EDSVKGLSSN SWHLTPLTIG MSHQMNDELQ ESSRCELMTP DDQQQTHKTV 300 YRFLEERPPD KKDSSWLNHD DKSSDSSTAQ LLISIPAATS HHLFPIFNSK S*

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MIMNGRASAG AGGVNGGGCR FPFSASQWQE LGEQALIFKH MASGVPVPPD LLFTIRRSLD  60
SNHLFPHPAA APLIGWNGFE MGLGRKIDQE PGRCRRTDGK KWRCSKEAFP DSKYCEKHMH  120
RGKNRSRKPV EQQVVNKSFS TPTQHSLNNT NTNTITLTTN CSKSHQSSSV ASDNHLSPPA  180
CAYYNISHPY HLHSSSSSNS RFDSTHILLH SASYYRSRYD GSSNHGSVLK EVVDEQSQSQ  240
SQSQSQSLLN EDSVKGLSSN SWHLTPLTIG MSHQMNDELQ ESSRCELMTP DDQQQTHKTV  300
YRFLEERPPD KKDSSWLNHD DKSSDSSTAQ LLISIPAATS HHLFPIFNSK S*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024445834.1	6e-82	growth-regulating factor 1 isoform X1
TrEMBL	A0A2K1WWV8	1e-80	A0A2K1WWV8_POPTR; Uncharacterized protein
STRING	POPTR_0018s07140.1	4e-81	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	7e-50	growth-regulating factor 5

Link Out ? help Back to Top
Phytozome	Kalax.0023s0024.1.p