PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0023s0056.2.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

FAR1

Protein Properties

Length: 684aa MW: 78803.8 Da PI: 8.0444

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0023s0056.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.8	2.7e-21	76	159	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAke+GF vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ ++++w++ ++ l+HnH l Kalax.0023s0056.2.p 76 NYYNCYAKEAGFCVRVKNSWFKRNSKEKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMIRMRLVDSKRWRIVEVTLDHNHLL 159 69***************************************9988.....99*******************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.5E-19	76	159	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.2E-30	278	371	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.693	565	601	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.3E-5	576	603	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 684 aa Download sequence Send to blast
MEVISLGSEQ VRDIESNEER LEREGGVVEL DGQSYKSLER DGLSELDGEN AACQPRKEFV 60 APAVGMEFES YDDVYNYYNC YAKEAGFCVR VKNSWFKRNS KEKYGAVLCC SSQGFKRIKD 120 VNRLRKETRT GCPAMIRMRL VDSKRWRIVE VTLDHNHLLG SRVHKSVKRL TNCTKRKLNS 180 NSDAEVRTIK LYHALVVDAG GDGSCNVIGR EARTQSSKPD QLCLKKGDSQ SVYNYFCRMQ 240 MSNSNFFHSV DFNVDGLLRN VFWADARSRA ACGYFGDVVR FDSTYLSSKY ETPLVTFVGL 300 NHHGQSVLLG CGLLSNETTE SYVWIFKTWA ACMNGHTPQT IITDRCLCLQ TAISQVFPRS 360 HHRFGLFDIM RRVPEKLGGL RNYDAIRKAL FKAVYEILKV GEFEGAWGFM VHHFGVADNE 420 WLQSLYKDRL LWAPVYLKDT FFAGMAAASQ GDNISPFFDK YVHKQTPLKE FLDKYEFSVQ 480 KKHKEESLAD IESRNWIPIL KSRCSFELQV SKAYTKEMFN KFQFEVEEMY SCFSTMQLHV 540 NGPITIFLVK ERILVEGNRR EIRDFEVMYN RSASEVRCIC SCFNFNGYLC RHSLCVLNFN 600 GVEEIPSKYI LPRWRKDYKR VYIPISCSNG LNLTDQAQFF NQLYRSALQV VEEGVVSFDH 660 FKVALEAFEE SLNRIHGLEE KLD*

Sequence ? help Back to Top

Protein Sequence Length: 684 aa Download sequence Send to blast

MEVISLGSEQ VRDIESNEER LEREGGVVEL DGQSYKSLER DGLSELDGEN AACQPRKEFV  60
APAVGMEFES YDDVYNYYNC YAKEAGFCVR VKNSWFKRNS KEKYGAVLCC SSQGFKRIKD  120
VNRLRKETRT GCPAMIRMRL VDSKRWRIVE VTLDHNHLLG SRVHKSVKRL TNCTKRKLNS  180
NSDAEVRTIK LYHALVVDAG GDGSCNVIGR EARTQSSKPD QLCLKKGDSQ SVYNYFCRMQ  240
MSNSNFFHSV DFNVDGLLRN VFWADARSRA ACGYFGDVVR FDSTYLSSKY ETPLVTFVGL  300
NHHGQSVLLG CGLLSNETTE SYVWIFKTWA ACMNGHTPQT IITDRCLCLQ TAISQVFPRS  360
HHRFGLFDIM RRVPEKLGGL RNYDAIRKAL FKAVYEILKV GEFEGAWGFM VHHFGVADNE  420
WLQSLYKDRL LWAPVYLKDT FFAGMAAASQ GDNISPFFDK YVHKQTPLKE FLDKYEFSVQ  480
KKHKEESLAD IESRNWIPIL KSRCSFELQV SKAYTKEMFN KFQFEVEEMY SCFSTMQLHV  540
NGPITIFLVK ERILVEGNRR EIRDFEVMYN RSASEVRCIC SCFNFNGYLC RHSLCVLNFN  600
GVEEIPSKYI LPRWRKDYKR VYIPISCSNG LNLTDQAQFF NQLYRSALQV VEEGVVSFDH  660
FKVALEAFEE SLNRIHGLEE KLD*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002263979.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6
Refseq	XP_019077918.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6
Refseq	XP_019077919.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6
Refseq	XP_019077920.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6
Refseq	XP_019077921.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A2N9G4Y6	0.0	A0A2N9G4Y6_FAGSY; Uncharacterized protein
STRING	VIT_09s0002g07400.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Link Out ? help Back to Top
Phytozome	Kalax.0023s0056.2.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]