PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0024s0148.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 242aa    MW: 26756.3 Da    PI: 10.2013
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0024s0148.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-055678123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C+ C+++F++   L  H+++H
  Kalax.0024s0148.1.p 56 YTCSFCTRRFKSAQALGGHMNVH 78
                         9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.66E-65382No hitNo description
PfamPF139124.6E-65580IPR007087Zinc finger, C2H2
SMARTSM003550.00325678IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.7415683IPR007087Zinc finger, C2H2
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MEKVVMRSRC EAVVLSNRDM NRKLKDKLRY RDEGTSNGVV TQDDADLLTS WPPRYYTCSF  60
CTRRFKSAQA LGGHMNVHRR ARAILRSQSM STLPSPPSSP WLLKTVITPA HHPLQDDNHN  120
HLFILPNPNP HWPSNTPHHA SVISPSRSYL PMISTTSTAR SSTSEHKNPL LAAAANKHAP  180
QGLYNTGERD KKNSVKAEMN GGLRSRTDQD DVVVRLSLCT GLITSSSAAD QGIDLELRLG  240
V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-115178229superman protein
2l1o_A3e-115178229Transcriptional regulator SUPERMAN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.12e-20C2H2 family protein