PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0024s0161.2.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 295aa MW: 31775.8 Da PI: 6.9376

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0024s0161.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.3	7.5e-10	143	187	5	54
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ + K + a++L + v+Y+k L Kalax.0024s0161.2.p 143 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 187 99*********************55......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.27E-15	136	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.12	138	187	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.8E-15	140	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.0E-7	143	187	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.5E-11	144	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MANNHHHHHH HSQAPTADDF LEHLLGIPSY AASSDSGLGG NDVGLGSHMM LQLSSGADGS 60 GHVGQGFHGS AFPLGLSLDQ GKPGGFLKLD EASGTVKRFV EESGDGRAPS VQNPMQNTMP 120 AAPHPPAMRP RVRARRGQAT DPHSIAERLR RERIAERIRA LQELVPSVNK TDRAAMLDEI 180 VDYVKFLRLQ VKVLSMSRLG GAGAVAPLVT DIPLSSVEEE SGGERRNQPA WEKWSNDGTE 240 QQVAKLMEEN VGAAMQFLQS KALCIMPINL ASIIYHTPQP DSSTLVKPER HPPS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	147	152	RLRRER

Functional Description ? help Back to Top
Source	Description
UniProt	Required for ovule fertilization. {ECO:0000269\|PubMed:15634699}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018812362.1	1e-142	PREDICTED: transcription factor UNE12-like
Swissprot	O22768	1e-116	UNE12_ARATH; Transcription factor UNE12
TrEMBL	A0A2I4DYZ2	1e-141	A0A2I4DYZ2_JUGRE; transcription factor UNE12-like
STRING	VIT_07s0141g00220.t01	1e-138	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02590.2	1e-89	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kalax.0024s0161.2.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]