PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0025s0027.2.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

YABBY

Protein Properties

Length: 161aa MW: 17936.4 Da PI: 7.9071

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0025s0027.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	94.4	2.7e-29	20	134	3	112
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas.qllaaeshldeslkee....lleelkveeenlksnve 87 + sss+q+Cyv+C+fC+t+lavsvPs slfk+vtvrCGhCt+llsvn++ + +++++h + ++++ l+eel v ++ ++ Kalax.0025s0027.2.p 20 HSSSSHQLCYVHCDFCDTVLAVSVPSCSLFKTVTVRCGHCTNLLSVNMRALLvTPQPSSNHQYHPIHNPppslLQEELYVVNTVMNNSAA 109 67899****************************************999876625566777655555544677666666666666666666 PP YABBY 88 keesastsvsseklsenedeevprv 112 +e+ ++++++++++++ + + p+ Kalax.0025s0027.2.p 110 AESGQEREQEHHRIPTMMQIQQPKR 134 6555555555555544444333332 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.1E-28	23	144	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MSSSSTSSFS PPDHHQTLVH SSSSHQLCYV HCDFCDTVLA VSVPSCSLFK TVTVRCGHCT 60 NLLSVNMRAL LVTPQPSSNH QYHPIHNPPP SLLQEELYVV NTVMNNSAAA ESGQEREQEH 120 HRIPTMMQIQ QPKRVDEMLN PFSKQKTSLF ASINKRKIIL *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020411971.1	6e-30	axial regulator YABBY 1 isoform X1
TrEMBL	A0A251QFK4	2e-29	A0A251QFK4_PRUPE; Uncharacterized protein
STRING	XP_008232594.1	2e-29	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00180.1	1e-24	YABBY family protein

Link Out ? help Back to Top
Phytozome	Kalax.0025s0027.2.p