PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0025s0046.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

BES1

Protein Properties

Length: 688aa MW: 77282.3 Da PI: 5.9861

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0025s0046.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	135.5	5.7e-42	61	171	1	110
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasasp 90 ggs+r+++ +E+E++k+RER+RRai+a+i+aGLR++Gny+l++raD+n+V++AL+reAGw+v +DGtt++ +s+ ++ + a + +sp Kalax.0025s0046.1.p 61 GGSRRSRPLEEKERTKLRERHRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWTVLPDGTTFPSQSQAPRPVNGAPNTIATSP 150 689*******************************************************************76666645554444444555 PP DUF822 91 esslq.sslkssalaspvesy 110 s+++ + + +s+++ +sy Kalax.0025s0046.1.p 151 PSQMTaQPIPTSSFRGESPSY 171 555543444444444444443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	2.7E-38	62	188	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	5.36E-172	242	684	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	7.1E-193	245	683	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	3.9E-102	251	664	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.1E-70	282	296	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.1E-70	303	321	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.1E-70	325	346	IPR001554	Glycoside hydrolase, family 14
PROSITE pattern	PS00506	0	329	337	IPR018238	Glycoside hydrolase, family 14, conserved site
PRINTS	PR00750	3.1E-70	418	440	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.1E-70	491	510	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.1E-70	525	541	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.1E-70	542	553	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.1E-70	560	583	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.1E-70	600	622	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 688 aa Download sequence Send to blast
MATELQKMIG LSEDDDEEDD MGVKEEGIEE ARNNAIMMAG LGEGMSNSHF QQHHQESSSQ 60 GGSRRSRPLE EKERTKLRER HRRAITARIL AGLRRHGNYN LRVRADINDV IAALAREAGW 120 TVLPDGTTFP SQSQAPRPVN GAPNTIATSP PSQMTAQPIP TSSFRGESPS YPYSADYNAC 180 RLNGVYMSSN IPYDLSSDEM SHTSLVGDKC GQTEVLPLVD GNMASIDKQI VEMPTRLQER 240 DFAGTSYIPV YVMLPLGVIN LKCEIVDPDG LIKQLRLLKS VNVDGVMVDC WWGIVEAHAP 300 LDYNWNGYKR LFQIVRELKL KLQVVMSFHE CGGNVGDDVC IPLPHWVVEV GRSNPDIFFT 360 DREGRRNPEC LTWGIDKQRI LKGRTAIEVY FDFMKSFRVE FHDFFEDGCI SLIQVGLGPC 420 GDMRYPSCPV KHGWRYPGVG QFQCYDQYLL KSLATAAEAR GHSFWGRAPD NTGSYNSRPF 480 ETGFFCDGGD YDGYHGRFFL SWYSQVLIDH GDRVLSLAKL AFEGTQIAAK LPGIHWWYKT 540 VSHAAELTAG FHNPSNRDGY APVVAMLKKH GVIVNFTCVE VPVFSEHDEV MEAFADSDGL 600 VWQVMNAAWD AGMHVASENS RPCYDRQAYN KILDVAKPFD NPDGQHLCTF NYLRLGLHLM 660 GQNNLMEFDH FVKKMHGEAT LDHQIQR*

Sequence ? help Back to Top

Protein Sequence Length: 688 aa Download sequence Send to blast

MATELQKMIG LSEDDDEEDD MGVKEEGIEE ARNNAIMMAG LGEGMSNSHF QQHHQESSSQ  60
GGSRRSRPLE EKERTKLRER HRRAITARIL AGLRRHGNYN LRVRADINDV IAALAREAGW  120
TVLPDGTTFP SQSQAPRPVN GAPNTIATSP PSQMTAQPIP TSSFRGESPS YPYSADYNAC  180
RLNGVYMSSN IPYDLSSDEM SHTSLVGDKC GQTEVLPLVD GNMASIDKQI VEMPTRLQER  240
DFAGTSYIPV YVMLPLGVIN LKCEIVDPDG LIKQLRLLKS VNVDGVMVDC WWGIVEAHAP  300
LDYNWNGYKR LFQIVRELKL KLQVVMSFHE CGGNVGDDVC IPLPHWVVEV GRSNPDIFFT  360
DREGRRNPEC LTWGIDKQRI LKGRTAIEVY FDFMKSFRVE FHDFFEDGCI SLIQVGLGPC  420
GDMRYPSCPV KHGWRYPGVG QFQCYDQYLL KSLATAAEAR GHSFWGRAPD NTGSYNSRPF  480
ETGFFCDGGD YDGYHGRFFL SWYSQVLIDH GDRVLSLAKL AFEGTQIAAK LPGIHWWYKT  540
VSHAAELTAG FHNPSNRDGY APVVAMLKKH GVIVNFTCVE VPVFSEHDEV MEAFADSDGL  600
VWQVMNAAWD AGMHVASENS RPCYDRQAYN KILDVAKPFD NPDGQHLCTF NYLRLGLHLM  660
GQNNLMEFDH FVKKMHGEAT LDHQIQR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1btc_A	1e-148	246	678	6	440	BETA-AMYLASE
1bya_A	1e-148	246	678	10	444	BETA-AMYLASE
1byb_A	1e-148	246	678	10	444	BETA-AMYLASE
1byc_A	1e-148	246	678	10	444	BETA-AMYLASE
1byd_A	1e-148	246	678	10	444	BETA-AMYLASE
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002273843.1	0.0	PREDICTED: beta-amylase 7
Swissprot	O80831	0.0	BAM7_ARATH; Beta-amylase 7
TrEMBL	F6I626	0.0	F6I626_VITVI; Beta-amylase
STRING	VIT_15s0046g02640.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45880.1	0.0	beta-amylase 7

Link Out ? help Back to Top
Phytozome	Kalax.0025s0046.1.p

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]