PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0025s0111.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 380aa MW: 41128.1 Da PI: 8.172

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0025s0111.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.8	6e-11	312	357	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri ++ +L++l+P+ +k s a++L +Av++Ik Lq Kalax.0025s0111.1.p 312 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIKGLQ 357 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.024	306	356	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-14	309	368	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.23E-11	310	361	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.3E-13	311	369	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.5E-8	312	357	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.0E-13	312	362	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MFPSSNSSSQ SQQSMAGSSL IRNGSAPGSV LNRAVDSVLN NSNSSSNNNA DSHHDFSPFL 60 SPPNFNLPQH HQPAYHQYFS ADSSSISSDS NCKVNNLNHH PASDPTKHSD SKRLQRSGIG 120 LNDFNIDDFS IAANLKIGEG GGSSSSSPAL VRHSSSPAGF LNQLTADLGG FSVPRGSGNY 180 SHGSSSNGPG TSRLKPQLSF TRQDSNMSQL SGITENIIDG LNQNSGHREA HNYTYANDAW 240 DSGASITFSG PPTKRNKNEE EYLNCFSGLE HQFSLPQTTL EMATVEKLLQ IPEDSVPCKI 300 RAKRGFATHP RSIAERERRT RISGKLKKLQ DLVPNMDKQT SYADMLDLAV QHIKGLQNQV 360 QKLNKDMENC TCGCKRSTS*

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MFPSSNSSSQ SQQSMAGSSL IRNGSAPGSV LNRAVDSVLN NSNSSSNNNA DSHHDFSPFL  60
SPPNFNLPQH HQPAYHQYFS ADSSSISSDS NCKVNNLNHH PASDPTKHSD SKRLQRSGIG  120
LNDFNIDDFS IAANLKIGEG GGSSSSSPAL VRHSSSPAGF LNQLTADLGG FSVPRGSGNY  180
SHGSSSNGPG TSRLKPQLSF TRQDSNMSQL SGITENIIDG LNQNSGHREA HNYTYANDAW  240
DSGASITFSG PPTKRNKNEE EYLNCFSGLE HQFSLPQTTL EMATVEKLLQ IPEDSVPCKI  300
RAKRGFATHP RSIAERERRT RISGKLKKLQ DLVPNMDKQT SYADMLDLAV QHIKGLQNQV  360
QKLNKDMENC TCGCKRSTS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010650469.1	1e-124	PREDICTED: transcription factor bHLH128 isoform X2
Refseq	XP_018815769.1	1e-124	PREDICTED: transcription factor bHLH128-like isoform X1
Swissprot	Q8H102	2e-77	BH128_ARATH; Transcription factor bHLH128
TrEMBL	A0A2I4E8P9	1e-122	A0A2I4E8P9_JUGRE; transcription factor bHLH128-like isoform X1
TrEMBL	F6I3R9	1e-122	F6I3R9_VITVI; Uncharacterized protein
STRING	VIT_05s0124g00240.t01	1e-123	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43140.2	2e-68	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kalax.0025s0111.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]