PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0026s0117.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 406aa    MW: 45158.7 Da    PI: 6.6407
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0026s0117.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.37.3e-50201443128
                  NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                          pGfrF+Ptdeel+++yL+kk+eg++ ++ evi+ev+i+++ePwdLp k+v ++++ew+fFs+r +ky++g++++rat sgyWkatgk+++
  Kalax.0026s0117.1.p  20 PGFRFSPTDEELISYYLHKKMEGSEKSV-EVIPEVEICRYEPWDLPgKSVIQSDNEWFFFSPRGRKYPNGSQSKRATGSGYWKATGKERN 108
                          9************************999.99***************777778899*********************************** PP

                  NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          v+s +++ +g+k+tLvf+ grapkg++t+W+mhey +
  Kalax.0026s0117.1.p 109 VKS-SSNFIGTKRTLVFHLGRAPKGQRTEWIMHEYCM 144
                          ***.9999***************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-5610159IPR003441NAC domain
PROSITE profilePS5100553.53518160IPR003441NAC domain
PfamPF023659.3E-2620143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MGDMSWEAQM SLVAASARFP GFRFSPTDEE LISYYLHKKM EGSEKSVEVI PEVEICRYEP  60
WDLPGKSVIQ SDNEWFFFSP RGRKYPNGSQ SKRATGSGYW KATGKERNVK SSSNFIGTKR  120
TLVFHLGRAP KGQRTEWIMH EYCMHGNSQD SLVVCRLRKN TDFRANEGSH QDSASRQRRG  180
LSMTSNNMDQ AGFPDAPGHP NGHVVGDGHL VASDGERVDE GSSRKCSSSH DSYSIDQNGD  240
GLVSDRRLPH DVSQPESSSC VKDCNNDDFY AEILKDDIVQ LFDESSLTVT PSLQPFMPNM  300
FDSRTEQLPM IPATSSIAAP SQGVAQRRIR FDTSKFDTDE LEMHLNPPPG PQCFVTKLSA  360
GKLRGKYVLP LLIFAALLAL YLWYPVSEMK HTACACLCTG SQTVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-442016019165NO APICAL MERISTEM PROTEIN
1ut4_B2e-442016019165NO APICAL MERISTEM PROTEIN
1ut7_A2e-442016019165NO APICAL MERISTEM PROTEIN
1ut7_B2e-442016019165NO APICAL MERISTEM PROTEIN
3swm_A2e-442016022168NAC domain-containing protein 19
3swm_B2e-442016022168NAC domain-containing protein 19
3swm_C2e-442016022168NAC domain-containing protein 19
3swm_D2e-442016022168NAC domain-containing protein 19
3swp_A2e-442016022168NAC domain-containing protein 19
3swp_B2e-442016022168NAC domain-containing protein 19
3swp_C2e-442016022168NAC domain-containing protein 19
3swp_D2e-442016022168NAC domain-containing protein 19
4dul_A2e-442016019165NAC domain-containing protein 19
4dul_B2e-442016019165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP), probably via metalloprotease activity. Regulates gibberellic acid-mediated salt-responsive repression of seed germination and flowering via FT, thus delaying seed germination under high salinity conditions. {ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high salt stress (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Repressed by gibberellic acid (GA), but induced by the GA biosynthetic inhibitor paclabutrazol (PAC) (PubMed:18363782). Accumulates transiently in seeds upon imbibition (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Induced by drought stress (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021609917.11e-120NAC domain-containing protein 89
RefseqXP_021609918.11e-120NAC domain-containing protein 89
RefseqXP_021609919.11e-120NAC domain-containing protein 89
SwissprotQ9XIN74e-87NAC40_ARATH; NAC domain-containing protein 40
TrEMBLA0A0M5JKF01e-118A0A0M5JKF0_MANES; NAC transcription factors 92
STRINGcassava4.1_032848m1e-119(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.12e-89NTM1-like 8
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  2. Tian H, et al.
    NTL8 Regulates Trichome Formation in Arabidopsis by Directly Activating R3 MYB Genes TRY and TCL1.
    Plant Physiol., 2017. 174(4): p. 2363-2375
    [PMID:28649093]