PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0026s0128.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 253aa MW: 28345.6 Da PI: 4.7394

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0026s0128.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	149	2.3e-46	4	135	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 l+pGfrF Pt+eelv++yL++k+e+++ +l++vi+e++iy++ePw+Lp+ +++++++w+fF++r++++a+g r+nr+t+sgyWkat Kalax.0026s0128.1.p 4 LAPGFRFFPTEEELVSFYLRNKLENQRPDLHRVIPELNIYELEPWQLPQhageLCRGDTEQWFFFAPRQHREAQGGRPNRTTASGYWKAT 93 579*************************99************645543344777************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g+ v+s++++++g+k+t+vfy+g+ap+g+kt+W m+eyr+ Kalax.0026s0128.1.p 94 GTPGYVYSTDNRAIGVKRTMVFYTGKAPTGTKTKWKMNEYRA 135 **************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.88E-49	3	168	IPR003441	NAC domain
PROSITE profile	PS51005	49.016	4	170	IPR003441	NAC domain
Pfam	PF02365	2.6E-24	6	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MEELAPGFRF FPTEEELVSF YLRNKLENQR PDLHRVIPEL NIYELEPWQL PQHAGELCRG 60 DTEQWFFFAP RQHREAQGGR PNRTTASGYW KATGTPGYVY STDNRAIGVK RTMVFYTGKA 120 PTGTKTKWKM NEYRAIAQDD AAAAAAAAAA CSTSFPELRR EYSVCRVYVI SGNFRAFDRR 180 PSGVATGETL IGLPVENEPN LIPQNVHLVG ETSRLGALAA GDDGRDNPDI DDLDMESLGQ 240 DPELSWEQID WL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-35	4	136	17	143	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-35	4	136	17	143	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-35	4	136	17	143	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-35	4	136	17	143	NO APICAL MERISTEM PROTEIN
3swm_A	2e-35	4	136	20	146	NAC domain-containing protein 19
3swm_B	2e-35	4	136	20	146	NAC domain-containing protein 19
3swm_C	2e-35	4	136	20	146	NAC domain-containing protein 19
3swm_D	2e-35	4	136	20	146	NAC domain-containing protein 19
3swp_A	2e-35	4	136	20	146	NAC domain-containing protein 19
3swp_B	2e-35	4	136	20	146	NAC domain-containing protein 19
3swp_C	2e-35	4	136	20	146	NAC domain-containing protein 19
3swp_D	2e-35	4	136	20	146	NAC domain-containing protein 19
4dul_A	2e-35	4	136	17	143	NAC domain-containing protein 19
4dul_B	2e-35	4	136	17	143	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023913916.1	2e-99	NAC domain-containing protein 90
Swissprot	Q9FMR3	4e-83	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A2N9ISJ3	1e-97	A0A2N9ISJ3_FAGSY; Uncharacterized protein
STRING	cassava4.1_022893m	4e-93	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	2e-82	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	Kalax.0026s0128.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]