PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0026s0132.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NF-YB
Protein Properties Length: 179aa    MW: 19628.4 Da    PI: 10.425
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0026s0132.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB46.96.6e-1510103795
                NF-YB   7 flPianvsrimkkvlPanak.....iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 
                           lP + v r++k+ l   +      + kda     e +  fi ++++ a+d c++ +r+ +n++d+l al ++ f ++v+plk+ l  yr
  Kalax.0026s0132.1.p  10 QLPKTIVRRVVKEKLSDLSDdgpviVHKDAVLAFSEAARVFIHYLSATANDICKESRRQIVNAEDVLKALEEIEFPEFVDPLKASLDVYR 99 
                          67888888999888765332222327899999********************************************************** PP

                NF-YB  92 eleg 95 
                          e+++
  Kalax.0026s0132.1.p 100 EIHT 103
                          *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.5E-299145IPR009072Histone-fold
SuperFamilySSF471136.56E-2510126IPR009072Histone-fold
PfamPF008088.6E-101079IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MDEMTADVEQ LPKTIVRRVV KEKLSDLSDD GPVIVHKDAV LAFSEAARVF IHYLSATAND  60
ICKESRRQIV NAEDVLKALE EIEFPEFVDP LKASLDVYRE IHTGKREATI PKENESKKKS  120
KISASETASR SKKAANASNT KNNKSAKKKV LNGTKSNSKN KKAVNGTAST STKKAKKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5y26_A2e-131112718130DNA polymerase epsilon subunit D
5y27_A2e-131112718130DNA polymerase epsilon subunit D
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010031521.14e-53PREDICTED: DNA polymerase epsilon subunit D
TrEMBLA0A059A9S39e-52A0A059A9S3_EUCGR; Uncharacterized protein
STRINGXP_010031521.11e-52(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.12e-37nuclear factor Y, subunit B11