PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0027s0023.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Nin-like

Protein Properties

Length: 249aa MW: 28941.6 Da PI: 10.3207

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0027s0023.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	82.7	3.6e-26	133	182	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++++le+++kyF++pi+ AAk+++v+lTvLK++CR ++I+RWPhRkiksl Kalax.0027s0023.1.p 133 STLELEEIQKYFDMPITLAAKKMNVGLTVLKKRCRDLNIMRWPHRKIKSL 182 689*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.427	116	203	IPR003035	RWP-RK domain
Pfam	PF02042	1.7E-22	134	182	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
TILALISKIL RREPLSPKLN SYPSNVAAPT TDRYNADHHC MVFDPSTQYQ TWKNGPKLEY 60 DPHTSHDAHF YLSEDEMTYL NQLFKTDPVE PLECTGRKIG NVSADGTMRR DMKEARKPQA 120 GTRKRVSRFT KSSTLELEEI QKYFDMPITL AAKKMNVGLT VLKKRCRDLN IMRWPHRKIK 180 SLKSLISNVK ELGLEKEIQM LEEHRMTVEK MPHVELTEKT KKLRQACFKA NYKKRRQVQA 240 SRCFSLIK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2G9G3C3	3e-53	A0A2G9G3C3_9LAMI; Uncharacterized protein
STRING	EOY23580	1e-53	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	1e-44	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Kalax.0027s0023.1.p