PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0028s0057.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 338aa    MW: 35716.5 Da    PI: 6.1891
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0028s0057.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79.2e-05213235123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++Cg  Fs+   L  H+r+H
  Kalax.0028s0057.1.p 213 HQCSICGSAFSSGQALGGHMRRH 235
                          79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.04E-9135158No hitNo description
PfamPF139122.5E-12135161IPR007087Zinc finger, C2H2
SMARTSM003550.17136158IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.18136163IPR007087Zinc finger, C2H2
PROSITE patternPS000280138159IPR007087Zinc finger, C2H2
SuperFamilySSF576675.04E-9208235No hitNo description
Gene3DG3DSA:3.30.160.604.7E-5211237IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139125.9E-11212237IPR007087Zinc finger, C2H2
SMARTSM003550.011213235IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.824213240IPR007087Zinc finger, C2H2
PROSITE patternPS000280215235IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MDFEGMMESA EMESYATVEY AAGPSQQIAK RKRTKRRRIV VSSSSGGGGD DKQGCVLASS  60
EEEEEEGDRS VYESTVTTAT EEEDMAYCLI LLARGGGDVG LGDVNREESA IKTERKRKKA  120
VGSRKTADTI SAVGVYECKT CDKAFQSFQA LGGHRASHHK KPKVAATNDA IPEEVKLVDQ  180
IQMVSSTAQS AIQLKPPSSS SSLAAAHNSS KVHQCSICGS AFSSGQALGG HMRRHRGAMI  240
NYTNHTAAAG GAAVVESSSS DEAAAVVVER GTSDNHNDFL SSLDLNLPAP GEEDEDHHRR  300
SYHQQFIAGG HVNSNASATA SAAALVFLTP PLVGCYF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13438KRRRI
2114118RKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-31C2H2 family protein