PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0028s0071.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 241aa    MW: 26801.8 Da    PI: 5.1493
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0028s0071.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-173075148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+ +++E++l+v+++k+lG++ W++Ia +++ gRt++++k++w++yl
  Kalax.0028s0071.2.p 30 RGNISPDEEDLIVRLHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTYL 75
                         7899******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.159124IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.3E-111036IPR009057Homeodomain-like
SuperFamilySSF466893.18E-201083IPR009057Homeodomain-like
PROSITE profilePS5129426.7082579IPR017930Myb domain
SMARTSM007172.7E-162977IPR001005SANT/Myb domain
PfamPF002498.4E-163075IPR001005SANT/Myb domain
CDDcd001672.05E-123475No hitNo description
Gene3DG3DSA:1.10.10.603.9E-213775IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGFSVSAGLK RCGKSCRLRW LNYLRPDIKR GNISPDEEDL IVRLHKLLGN RWSLIAGRLP  60
GRTDNEVKNY WNTYLSKKIG SSNKNNTKKK QQQPPFHVAQ QTSMNHQVLL EEEKSSLVVT  120
ASEDQLKNSN YMLNTNSSQK VGSGSNEDCL TLEEIIEFAE FGGGKTQQNN IVGADPGSSS  180
TVQHDSFCPL GPESNLAWPG HKDGQWDDWL LDAMAADAED WLPDCDVRDF LNSVETDSTV  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-19118140110B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008228203.14e-45PREDICTED: transcription factor MYB114-like
RefseqXP_016721896.13e-45PREDICTED: transcription factor MYB114-like
RefseqXP_017625244.13e-45PREDICTED: transcription factor MYB114-like
TrEMBLA0A4D6V2V43e-45A0A4D6V2V4_9ROSI; MYB transcription factor 2
STRINGXP_008228203.12e-44(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.15e-39myb domain protein 82