PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0029s0025.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

ARR-B

Protein Properties

Length: 649aa MW: 70807.5 Da PI: 5.1779

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0029s0025.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	94.7	7e-30	215	268	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +pr++WtpeLH++Fv+av+qL G++kA+Pk+il++m+v+gLt+e+v+SHLQkYR+ Kalax.0029s0025.1.p 215 RPRVVWTPELHRKFVSAVNQL-GIDKAVPKKILDVMDVEGLTRENVASHLQKYRM 268 59*****************.******************************8 PP
2	Response_reg	79.7	9.8e-27	30	138	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 vl+vdD+++ + ++++l++ +y +v+++ ++eale+l+e++ +D++++D++mp++dG++ll++i e +lp+i+++ ++ + ++ + Kalax.0029s0025.1.p 30 VLCVDDDQTCLFWMENLLKSCQY-NVTTTLYAREALEMLRENKsiYDIVITDVQMPDIDGFQLLETIGLEM-DLPVIMMSIYDHQGYVSR 117 89*******************.***********99999*******************6654.8************* PP HHHTTESEEEESS--HHHHHH CS Response_reg 89 alkaGakdflsKpfdpeelvk 109 ++ Ga d+l Kp+ ee+ + Kalax.0029s0025.1.p 118 GVHHGAVDYLLKPVRLEEIQN 138 ***************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF036392	2.0E-138	3	647	IPR017053	Response regulator B-type, plant
SuperFamily	SSF52172	4.27E-33	27	151	IPR011006	CheY-like superfamily
Gene3D	G3DSA:3.40.50.2300	3.8E-39	27	151	No hit	No description
SMART	SM00448	1.1E-27	28	140	IPR001789	Signal transduction response regulator, receiver domain
PROSITE profile	PS50110	39.5	29	144	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	7.8E-24	30	138	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	1.00E-25	31	144	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.5E-31	212	273	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.609	212	271	IPR017930	Myb domain
SuperFamily	SSF46689	1.34E-20	213	272	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.8E-25	216	268	IPR006447	Myb domain, plants
Pfam	PF00249	1.7E-7	217	267	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 649 aa Download sequence Send to blast
MNKDDRKNKA VMGPQQEKEI DDQFPVGIRV LCVDDDQTCL FWMENLLKSC QYNVTTTLYA 60 REALEMLREN KSIYDIVITD VQMPDIDGFQ LLETIGLEMD LPVIMMSIYD HQGYVSRGVH 120 HGAVDYLLKP VRLEEIQNIW QHVLRKRKGL DKGKKVVTQD KSSPGAGNGA VANSIASAGD 180 TSDKRLRDPS DKDDEDYEEE DDSGRENEEQ TSQKRPRVVW TPELHRKFVS AVNQLGIDKA 240 VPKKILDVMD VEGLTRENVA SHLQKYRMYL KRISNGNPQQ GMFGALGGRH ALDAMGYRGG 300 RLHNSLLSGY PPSLSGILSG RVNSSNGVNF RSISSSDLIQ SGQNLRNSIN PLAKLQPNVM 360 PSLQNGSLFQ GMQGGFEQDP TQASKAMTQL ADFNPGLGAT GLRVSENLMD PKVVLNGSSS 420 RKMLPVPGAL RIGGMPGAPS NNAGMMNHSG TSDSWKSAAQ FPQSSFQMGG SGSGNGTLTQ 480 DQHLPINNNA MNGIASTGIQ PQLQGFPQML APLRNSNIGM QGELGMHNAE HIKQQEYTQE 540 LNNLFGSLNP IMTSGGGIMG SMGMDQNHLV ANGGNFVGQQ TGILGTDPNF KPSNDSFVPE 600 QASLPQDDFI PNNVESLDEI MNTMIRRDNN GASSLFMDGD FNFDVEGL*

Sequence ? help Back to Top

Protein Sequence Length: 649 aa Download sequence Send to blast

MNKDDRKNKA VMGPQQEKEI DDQFPVGIRV LCVDDDQTCL FWMENLLKSC QYNVTTTLYA  60
REALEMLREN KSIYDIVITD VQMPDIDGFQ LLETIGLEMD LPVIMMSIYD HQGYVSRGVH  120
HGAVDYLLKP VRLEEIQNIW QHVLRKRKGL DKGKKVVTQD KSSPGAGNGA VANSIASAGD  180
TSDKRLRDPS DKDDEDYEEE DDSGRENEEQ TSQKRPRVVW TPELHRKFVS AVNQLGIDKA  240
VPKKILDVMD VEGLTRENVA SHLQKYRMYL KRISNGNPQQ GMFGALGGRH ALDAMGYRGG  300
RLHNSLLSGY PPSLSGILSG RVNSSNGVNF RSISSSDLIQ SGQNLRNSIN PLAKLQPNVM  360
PSLQNGSLFQ GMQGGFEQDP TQASKAMTQL ADFNPGLGAT GLRVSENLMD PKVVLNGSSS  420
RKMLPVPGAL RIGGMPGAPS NNAGMMNHSG TSDSWKSAAQ FPQSSFQMGG SGSGNGTLTQ  480
DQHLPINNNA MNGIASTGIQ PQLQGFPQML APLRNSNIGM QGELGMHNAE HIKQQEYTQE  540
LNNLFGSLNP IMTSGGGIMG SMGMDQNHLV ANGGNFVGQQ TGILGTDPNF KPSNDSFVPE  600
QASLPQDDFI PNNVESLDEI MNTMIRRDNN GASSLFMDGD FNFDVEGL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1irz_A	3e-25	211	274	1	64	ARR10-B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). Involved in activating SHY2 during meristem growth and controls PIN expression via activation of SHY2 (PubMed:20605455). {ECO:0000250\|UniProtKB:Q940D0, ECO:0000269\|PubMed:17363254, ECO:0000269\|PubMed:20605455}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	P62598	6e-96	ARR12_ARATH; Two-component response regulator ARR12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25180.1	2e-87	response regulator 12

Link Out ? help Back to Top
Phytozome	Kalax.0029s0025.1.p

Publications ? help Back to Top
Takahashi N, et al. Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots. Curr. Biol., 2013. 23(18): p. 1812-7 [PMID:24035544] Cortleven A, et al. A novel protective function for cytokinin in the light stress response is mediated by the Arabidopsis histidine kinase2 and Arabidopsis histidine kinase3 receptors. Plant Physiol., 2014. 164(3): p. 1470-83 [PMID:24424319] Kim HJ,Kieber JJ,Schaller GE The rice F-box protein KISS ME DEADLY2 functions as a negative regulator of cytokinin signalling. Plant Signal Behav, 2013. 8(12): p. e26434 [PMID:24675172] Choi SH, et al. Gene duplication of type-B ARR transcription factors systematically extends transcriptional regulatory structures in Arabidopsis. Sci Rep, 2014. 4: p. 7197 [PMID:25425016] Jiang L, et al. Strigolactones spatially influence lateral root development through the cytokinin signaling network. J. Exp. Bot., 2016. 67(1): p. 379-89 [PMID:26519957] Cortleven A, et al. Cytokinin Regulates the Etioplast-Chloroplast Transition through the Two-Component Signaling System and Activation of Chloroplast-Related Genes. Plant Physiol., 2016. 172(1): p. 464-78 [PMID:27388681] Kobayashi K, et al. Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling. Plant Physiol., 2017. 173(4): p. 2340-2355 [PMID:28193764] Zhang TQ, et al. A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration. Plant Cell, 2017. 29(5): p. 1073-1087 [PMID:28389585] Meng WJ, et al. Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL. Plant Cell, 2017. 29(6): p. 1357-1372 [PMID:28576846] Kobayashi K,Iwase A Simultaneous but spatially different regulation of non-photosynthetic callus formation and photosynthetic root development after shoot removal. Plant Signal Behav, 2017. 12(6): p. e1338999 [PMID:28594268] Dai X, et al. ARR12 promotes de novo shoot regeneration in Arabidopsis thaliana via activation of WUSCHEL expression. J Integr Plant Biol, 2017. 59(10): p. 747-758 [PMID:28681564] Zhang F,May A,Irish VF Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL. Trends Plant Sci., 2017. 22(10): p. 815-817 [PMID:28886911] Yan Z, et al. Type B Response Regulators Act As Central Integrators in Transcriptional Control of the Auxin Biosynthesis Enzyme TAA1. Plant Physiol., 2017. 175(3): p. 1438-1454 [PMID:28931628] Bustillo-Avendaño E, et al. Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis. Plant Physiol., 2018. 176(2): p. 1709-1727 [PMID:29233938]