PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0030s0028.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family FAR1
Protein Properties Length: 771aa    MW: 88787.3 Da    PI: 7.9027
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0030s0028.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.21.8e-2066141190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          +fYn YA+++GF++r+ + ++s+ +g+i +r+fvC keg++ +              +rtgC a ++vk+ ++g+w++++++++HnHel 
  Kalax.0030s0028.1.p  66 DFYNMYATKTGFKIRIGQLYRSRSDGSISSRRFVCAKEGFQLH--------------SRTGCPAFIRVKRLENGRWVIDHFHKDHNHELD 141
                          6***************************************877..............589****************************96 PP
2FAR157.44.8e-18220294190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          kfY  YA + GF++r+ +  +sk +g+it+r+fvCskeg++++               r+gC a l++k++++g w+v++l+leHnHel 
  Kalax.0030s0028.1.p 220 KFYFIYAAHEGFKIRIGQLFRSKFDGSITSRRFVCSKEGHQHS---------------RIGCGAYLRIKRQDSGMWVVDRLQLEHNHELK 294
                          69*************************************8765...............89****************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.0E-1666141IPR004330FAR1 DNA binding domain
PfamPF031016.6E-14220293IPR004330FAR1 DNA binding domain
PfamPF105512.2E-23382474IPR018289MULE transposase domain
PROSITE profilePS5096611.016658694IPR007527Zinc finger, SWIM-type
PfamPF044342.0E-8659692IPR007527Zinc finger, SWIM-type
SMARTSM005754.8E-8669696IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 771 aa     Download sequence    Send to blast
MKQRSTFFPS SEVVMHNQLC QSALVVKANP IAMVSTNRYV NMENERESGG EPHIGLEFDT  60
ADEARDFYNM YATKTGFKIR IGQLYRSRSD GSISSRRFVC AKEGFQLHSR TGCPAFIRVK  120
RLENGRWVID HFHKDHNHEL DSPGNICPPQ YQGKYVTASK PLADLSSRSG SRLREEESDC  180
QPCPSGTIDV KRFKKEERVD IPAVQPSVGL EFNSANEAYK FYFIYAAHEG FKIRIGQLFR  240
SKFDGSITSR RFVCSKEGHQ HSRIGCGAYL RIKRQDSGMW VVDRLQLEHN HELKVQPCAD  300
KEVPSVLVAL KEEEEDAFVS NLSQENSIGD QWYRTLLEYF QSKQSTETGF YYAVDLDGNK  360
CRNLFWADGR SRFSCSQFGD AVVFDIAYKR TSSVVPFASF IGINNHRQPV LLGCALIADE  420
SKESYCWLFQ TYLRAMSGRR PTSIITDQDE AVEQAVSQVF RGTRHCFSMW QMKKLEQEYL  480
GVLARGNNFR YEYEKCVYKS QTPAEFDASW TILISRFNLT GNSWLKEMYS KRSSWVPLFL  540
RGTFFAGLFG DESTTSYFSS LLNAQTPREE FATRYERVIQ RRREEEMQED MNSCNSQATL  600
QTKEPMEDQC RRLYTMAMFK VFQKELIDSY SYTGLRIYEE GIISKYLVKK GGSDSDPHTV  660
SLDGSSLNAN CSCQKFEYDG MLCRHILKVF QHMNLSEIPS RFILTRWRRN AKYALLDNID  720
PNFSSQELKA MVIWSLREEA SNFVEAGTTS IDRYRLALGI LREGNKDLCW *
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027121208.10.0protein FAR1-RELATED SEQUENCE 7-like
RefseqXP_027121209.10.0protein FAR1-RELATED SEQUENCE 7-like
RefseqXP_027121210.10.0protein FAR1-RELATED SEQUENCE 7-like
RefseqXP_027121211.10.0protein FAR1-RELATED SEQUENCE 7-like
SwissprotQ9M8J30.0FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBLA0A2R6P4H30.0A0A2R6P4H3_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRINGVIT_05s0020g02450.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.10.0FAR1-related sequence 7
Publications ? help Back to Top
  1. Ritter A, et al.
    The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
    Nat Commun, 2017. 8: p. 15235
    [PMID:28492275]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]