PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0030s0104.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 310aa MW: 33847.2 Da PI: 5.6143

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0030s0104.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51.5	1.8e-16	39	88	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f++Lr+l+P++ ++K + a+ L +++eY+++Lq Kalax.0030s0104.1.p 39 RSKHSVTEQRRRSKINERFQRLRDLIPNS----DQKRDTASFLLEVIEYVQYLQ 88 899***********************9....8*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	4.1E-22	34	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.67E-19	35	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.609	37	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.77E-16	39	92	No hit	No description
Pfam	PF00010	8.0E-14	39	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.5E-13	43	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MRSGVKNSNE EEDYGEEDQG GNQSNRDGKG SASKANATRS KHSVTEQRRR SKINERFQRL 60 RDLIPNSDQK RDTASFLLEV IEYVQYLQGE VQKYEGPYQP WSAEPAKLMP WRNSHWRTQS 120 IAPQPLGNGV GAGYAPKFND TSQSMLLGHP HEFSEPDALA DPTGKAMDQH PDLPGQAMSM 180 AMQVLSHPPQ NDGLLSHQMQ RPLSDAQSGD PSLAAGTFSQ PDGLIIESGT ISLSTAYSQG 240 LLNTLTDTLQ RAGVDLSQAN ISVQIDLGKR ANRGPVALED YGNLPSTHQP PSSSGEDLEQ 300 AQKRLKTQN*

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00219	DAP	Transfer from AT1G69010	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002514584.1	1e-102	transcription factor BIM2
Swissprot	Q9CAA4	1e-79	BIM2_ARATH; Transcription factor BIM2
TrEMBL	B9RLG5	1e-100	B9RLG5_RICCO; Uncharacterized protein
STRING	XP_002514584.1	1e-101	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	9e-77	BES1-interacting Myc-like protein 2

Link Out ? help Back to Top
Phytozome	Kalax.0030s0104.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]