PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0030s0127.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 179aa    MW: 19152.2 Da    PI: 10.0952
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0030s0127.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.000653860123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ Cg+ Fs+   L  H  +H
  Kalax.0030s0127.1.p 38 FECKTCGRAFSSFQALGGHSASH 60
                         89*********988887776655 PP
2zf-C2H211.90.0007189111123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++Cg+ F     L  H+r+H
  Kalax.0030s0127.1.p  89 HECSICGMKFGLGQALGGHMRRH 111
                          78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.38E-837111No hitNo description
SMARTSM003550.393860IPR015880Zinc finger, C2H2-like
PfamPF139122.9E-113863IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.723865IPR007087Zinc finger, C2H2
PROSITE patternPS0002804060IPR007087Zinc finger, C2H2
PfamPF139125.9E-988112IPR007087Zinc finger, C2H2
PROSITE profilePS501579.32889116IPR007087Zinc finger, C2H2
SMARTSM003550.1289111IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MKRGREDESS MEADAAECLV RISCASRNSP GSSGRVMFEC KTCGRAFSSF QALGGHSASH  60
RKKPKPSPGE ATAAMASEAV RVKAEPTVHE CSICGMKFGL GQALGGHMRR HRIELKGGGG  120
VGGIVSDQDA KLLVPVLRRS LSKNKRVIMC MDLNLTPLEN DLELLFGKMA PKVDRRLV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047364.18e-51PREDICTED: zinc finger protein ZAT11
TrEMBLM9Z1Z02e-49M9Z1Z0_EUCGR; C2H2-type zinc finger protein 6
STRINGXP_010047364.13e-50(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.19e-35C2H2 family protein