PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0030s0145.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HSF
Protein Properties Length: 310aa    MW: 34502.4 Da    PI: 4.4961
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0030s0145.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.85.4e-36101012102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k++++++d+++++++sw+e+g++fvv+++ efak++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF++++Fkkg+ 
  Kalax.0030s0145.1.p  10 FLTKTFQLIDDPSTDDVVSWNEDGSTFVVWKTAEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKTVPDK---------WEFANEHFKKGQA 90 
                          9***************************************************************9999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          e+l++i+r+k 
  Kalax.0030s0145.1.p  91 EHLTEIRRRKA 101
                          ********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.4E-37493IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.5E-57699IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.01E-33699IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.2E-311099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-201033IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-204860IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-206173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.3705.1E-4147180IPR014751DNA repair protein XRCC4, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006302Biological Processdouble-strand break repair
GO:0006310Biological ProcessDNA recombination
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MAVRSAPAPF LTKTFQLIDD PSTDDVVSWN EDGSTFVVWK TAEFAKDLLP KYFKHNNFSS  60
FVRQLNTYGF RKTVPDKWEF ANEHFKKGQA EHLTEIRRRK AVVAAQAAGK PTGGSSPSNS  120
GEDLGSTSTS SPGSKNQACA DEIMMQFTGL SDENEKLKKD NEMLNSELAR AKKQCEELVS  180
FIARCMKVGV EEIDGIMKQQ GATVSSSSDP KTVVEISDDD DEDEEFENEE VVGEEEEEED  240
DDDKVDSLKL FGVWLKGEKE MKNKRCRDEA VLSGNDKPIM DGSSGGSKKM KNIEFDAWWL  300
KMSTVPSKM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-24110411125Heat shock factor protein 1
5d5u_B3e-2459925129Heat shock factor protein 1
5d5v_B3e-2459925129Heat shock factor protein 1
5d5v_D3e-2459925129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021274874.11e-107heat shock factor protein HSF24
SwissprotP223354e-98HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A061DGX91e-105A0A061DGX9_THECC; Heat shock factor 4
STRINGEOX914071e-106(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.13e-76heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]