PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0031s0107.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Trihelix
Protein Properties Length: 297aa    MW: 33238.3 Da    PI: 6.3344
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0031s0107.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.11.3e-1418108186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                          +Wt++   +Liea  ++  +l+rg+l++++W++v++ +     + ++ +r+ +qCk++++ ++k+yk +k++ +  +    s++p++d+l
  Kalax.0031s0107.1.p  18 CWTEEASSTLIEAWGRRYLDLNRGNLRQKDWQQVADIVnarhgQTKKTHRTDVQCKNRIDTIKKKYKVEKARVSAPAGMLASSWPFYDRL 107
                          7**************************************999999999***********************999988888889******9 PP

             trihelix  86 e 86 
                          +
  Kalax.0031s0107.1.p 108 D 108
                          8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.7E-2516110No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MTDSAAPSSR PVPVREDCWT EEASSTLIEA WGRRYLDLNR GNLRQKDWQQ VADIVNARHG  60
QTKKTHRTDV QCKNRIDTIK KKYKVEKARV SAPAGMLASS WPFYDRLDEL IGSNSKRPAA  120
GGAGSAVSVS VSESLSHSPP MALPLPYPYR KSAPLATAVL PKKRASPMDD SYFRRNYSAV  180
AAAAAAAATA DDEEEEEDED VREEGEEEDD DFVQGFRGYE DSEDGIRKLA RAIRKFGDVY  240
EKVEAEKQNQ MIEMEKQRMQ LAKDLEVQRM QMFVNMQLQL KKIKIAKGNK SNGEST*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007025374.11e-103PREDICTED: trihelix transcription factor ASIL2
RefseqXP_023924686.11e-103trihelix transcription factor ASIL2-like
TrEMBLA0A061GEJ11e-102A0A061GEJ1_THECC; Sequence-specific DNA binding transcription factors isoform 2
STRINGEOY279951e-102(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.17e-60sequence-specific DNA binding transcription factors