PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0031s0126.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

FAR1

Protein Properties

Length: 780aa MW: 89346.6 Da PI: 6.4465

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0031s0126.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	99.7	3.1e-31	72	163	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fYn+YA++vGFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+ +++ +r+r+ tr+gCka+l vk +++gkw v+ +++eHnH+l Kalax.0031s0126.1.p 72 FYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKASLSVKIQDSGKWAVSGFVKEHNHDL 161 9*************************************998888545677889********************************9 PP FAR1 90 ap 91 +p Kalax.0031s0126.1.p 162 VP 163 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-29	72	163	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.4E-32	284	376	IPR018289	MULE transposase domain
Pfam	PF04434	3.7E-11	552	598	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.707	568	600	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.6E-9	575	602	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 780 aa Download sequence Send to blast
MDHEIIEFDV ELGGGGEEDG VDIENAVDYD DMGQTYSGAG GVGEVYIPEG EFLDLEPYEG 60 MEFESEEAAK AFYNSYARRV GFSTRVSSSR RSRRDGAIIQ RQFVCAKEGF RNLNEKRTKD 120 REIKRPRTIT RVGCKASLSV KIQDSGKWAV SGFVKEHNHD LVPPDQVHCL RSHRQISGPA 180 KALIDTLQAA GMGPRRIMSA LIKEYGGISK VGFTEVDCRN YMRTNRSRNM EGDLQLLLDY 240 LRQMHNENPA FFYAVQSEED QNMSNVFWAD PKARSNYSYF SDTVTLDTTY RYNRYRLPFV 300 TFTGVNSHGQ PVLFGCAFLI NESEASFVWL FNTWLTAMSG QHPSSITTDH DAIVRSAITQ 360 VFPNTRHRFC KWHIFKKCQE MLSQVFLEHP GFEADLHKCV NLTDSIDEFE SCWLSLVDRY 420 DLRDHDWLQS LYSARKQWIP VYLRDAFFAE MSISQRSDSM NSYFDGYVNA STTLNQFFKL 480 YEKAIESRHE KEIKADFETV STPPSLKTPS PMEKQVSGLY TRKTFARFQE ELVGTLTFTA 540 SKVEDDGEVI TYQVVKFGEE HKAHYVRFKV LEMRASCSCQ MFEFSGLLCR HVLAVFRVTN 600 VLTLPSHYIL KRWTRNAKSN ITLEVRSNTA YTNYLESHTV RYSTLRHEAF RFVDEGAKTM 660 DTYNVAVDAL QEAFKKVTDA AKNEGNYAVP NGRPKEAPAS VGNQASLTTQ NQLCHVTENM 720 SEDEMDKKIQ ELISELDYTN KKCEVYRSNL LSVIKDIADH KHELLVKVQN IKMDMKECA*

Sequence ? help Back to Top

Protein Sequence Length: 780 aa Download sequence Send to blast

MDHEIIEFDV ELGGGGEEDG VDIENAVDYD DMGQTYSGAG GVGEVYIPEG EFLDLEPYEG  60
MEFESEEAAK AFYNSYARRV GFSTRVSSSR RSRRDGAIIQ RQFVCAKEGF RNLNEKRTKD  120
REIKRPRTIT RVGCKASLSV KIQDSGKWAV SGFVKEHNHD LVPPDQVHCL RSHRQISGPA  180
KALIDTLQAA GMGPRRIMSA LIKEYGGISK VGFTEVDCRN YMRTNRSRNM EGDLQLLLDY  240
LRQMHNENPA FFYAVQSEED QNMSNVFWAD PKARSNYSYF SDTVTLDTTY RYNRYRLPFV  300
TFTGVNSHGQ PVLFGCAFLI NESEASFVWL FNTWLTAMSG QHPSSITTDH DAIVRSAITQ  360
VFPNTRHRFC KWHIFKKCQE MLSQVFLEHP GFEADLHKCV NLTDSIDEFE SCWLSLVDRY  420
DLRDHDWLQS LYSARKQWIP VYLRDAFFAE MSISQRSDSM NSYFDGYVNA STTLNQFFKL  480
YEKAIESRHE KEIKADFETV STPPSLKTPS PMEKQVSGLY TRKTFARFQE ELVGTLTFTA  540
SKVEDDGEVI TYQVVKFGEE HKAHYVRFKV LEMRASCSCQ MFEFSGLLCR HVLAVFRVTN  600
VLTLPSHYIL KRWTRNAKSN ITLEVRSNTA YTNYLESHTV RYSTLRHEAF RFVDEGAKTM  660
DTYNVAVDAL QEAFKKVTDA AKNEGNYAVP NGRPKEAPAS VGNQASLTTQ NQLCHVTENM  720
SEDEMDKKIQ ELISELDYTN KKCEVYRSNL LSVIKDIADH KHELLVKVQN IKMDMKECA*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021636089.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_021636090.1	0.0	protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A067LI07	0.0	A0A067LI07_JATCU; Uncharacterized protein
STRING	XP_006486554.1	0.0	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Kalax.0031s0126.1.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]