PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0032s0015.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 275aa MW: 30154 Da PI: 7.2176

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0032s0015.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.7	1.2e-09	157	204	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Kalax.0032s0015.1.p 157 SHSLAERARREKISERMKILQDLVPGC----NKLIGKALVLDEIINYVQSLQ 204 8***********************9....666***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.56E-9	151	208	No hit	No description
SuperFamily	SSF47459	6.41E-17	151	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.4E-17	153	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.428	153	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.1E-7	157	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.6E-10	159	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MELPLVNESS FTPANPASYS LEDFWPLGAG IGDHTRVLGL RMANSERRTG LGNRDGSAEE 60 STVTGQSIGR IGGGGRKKRL ADESSTVDAS GAEQLKTSST KRVKILEPKE EKRSMKDEAD 120 CASVTGAKHA EQNTNMSEPP KQDYIHVRAR RGQATDSHSL AERARREKIS ERMKILQDLV 180 PGCNKLIGKA LVLDEIINYV QSLQHQVEFL SMKLEAINSS ITPKDKMLPG KDLEVLGFDS 240 TGMMFGTQPT SEYAQGPQPE WLHMHLGKTY ERAT*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269\|PubMed:23715469}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015882712.1	1e-110	transcription factor bHLH79 isoform X1
Swissprot	Q69WS3	9e-71	BH094_ORYSJ; Transcription factor BHLH094
Swissprot	Q9LV17	2e-70	BH079_ARATH; Transcription factor bHLH79
TrEMBL	A0A2I4FIZ4	1e-103	A0A2I4FIZ4_JUGRE; transcription factor bHLH79-like isoform X1
STRING	XP_008453158.1	1e-100	(Cucumis melo)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	3e-71	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kalax.0032s0015.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]