PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0032s0015.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 274aa    MW: 30025.8 Da    PI: 6.892
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0032s0015.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.2e-09156203455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Kalax.0032s0015.2.p 156 SHSLAERARREKISERMKILQDLVPGC----NKLIGKALVLDEIINYVQSLQ 203
                          8*************************9....666*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.80E-9150207No hitNo description
SuperFamilySSF474596.28E-17150219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.428152202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-17152220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-7156203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-10158208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MELPLVNESS FTPANPASYS LEDFWPLGAG IGDHTRVLGL RMANSERRTG LGNRDGSAEE  60
STVTGQSIGR IGGGGRKKRL ADESSTVDAS GAEQLTSSTK RVKILEPKEE KRSMKDEADC  120
ASVTGAKHAE QNTNMSEPPK QDYIHVRARR GQATDSHSLA ERARREKISE RMKILQDLVP  180
GCNKLIGKAL VLDEIINYVQ SLQHQVEFLS MKLEAINSSI TPKDKMLPGK DLEVLGFDST  240
GMMFGTQPTS EYAQGPQPEW LHMHLGKTYE RAT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015882713.11e-109transcription factor bHLH79 isoform X2
SwissprotQ69WS38e-71BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A2I4FIZ41e-101A0A2I4FIZ4_JUGRE; transcription factor bHLH79-like isoform X1
STRINGcassava4.1_013487m3e-99(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62610.13e-70bHLH family protein