PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0032s0021.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family FAR1
Protein Properties Length: 157aa    MW: 18397.2 Da    PI: 9.716
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0032s0021.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR130.21.5e-092583189
                 FAR1 31 rtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89
                         r+fvCsk+ ++  ek++  +++ +r+ tr gC   ++ + ++dg++ v+  e eHnH +
  Kalax.0032s0021.1.p  2 RQFVCSKKRNKIVEKES--NRSYSRNITRFGCPIFIQFSIDRDGRYTVQCHEMEHNHVF 58
                         89******999998877..88999*********************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-6258IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MRQFVCSKKR NKIVEKESNR SYSRNITRFG CPIFIQFSID RDGRYTVQCH EMEHNHVFSD  60
IRERHLMRSQ RSISDEQIEL LKSFRKCGIK LSDAIRFLKC QYGGSPNIGF INIYAYNVLG  120
NPDCKTFNGS DASCLIEIFK KRQKIEVDFF LKFQFG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-12FAR1-related sequence 5