PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0032s0032.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 499aa    MW: 55033.5 Da    PI: 4.7127
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0032s0032.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.54.7e-13170194327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                           e C++++r+G CkyG +CkF+H+p
  Kalax.0032s0032.1.p 170 AEDCNYYMRMGSCKYGLSCKFNHPP 194
                          689********************97 PP
2zf-CCCH277.8e-09218241427
                          ---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                          ++C++++  G CkyG  C+F+H++
  Kalax.0032s0032.1.p 218 VECKYYLSAGGCKYGKACRFSHSR 241
                          68********************95 PP
3zf-CCCH33.85.6e-11263286326
                          S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                          +++C++++r+G Cky ++C+F+H+
  Kalax.0032s0032.1.p 263 EKECPYYMRNGSCKYAATCRFNHP 286
                          689********************9 PP
4zf-CCCH33.19.2e-11385411127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +++++C ff++tG Ck+ +rCkF+H++
  Kalax.0032s0032.1.p 385 PGQPECTFFLKTGDCKFRSRCKFHHPK 411
                          5789*********************96 PP
5zf-CCCH28.52.7e-09431456227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++C +++ +G+Ck+G++C++ H+p
  Kalax.0032s0032.1.p 431 GQSICAHYSNYGICKFGPKCRYDHPP 456
                          7899********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.746167195IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-7167194IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.28E-5168195IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-10170194IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4173193IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.408214242IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-4214241IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-7218241IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.2E-5219243IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-6220242IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.911260288IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-5260287IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-5261288IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-8263286IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-4266285IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-4384411IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.464384412IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-6386411IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5388413IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-6426454IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.103429457IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4429456IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-6431456IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-4433455IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MEVPEPISTP DSDQRQPPTH GSQSPLPDQL GDDPKSPPPA PLTEEFQAIL NLKEDAAPDA  60
GEDSDGGHVN GVSEQEEEED VGGVGESQNE TGKDGEMEKA ENVEQEEEIV KDGWSDDQCG  120
RVDGDREEED SGDGYQADGW SNGNGVGETG SKEEVQGRDM QLQYPLRPGA EDCNYYMRMG  180
SCKYGLSCKF NHPPRRRNLT LKPRMKERED NSERPMQVEC KYYLSAGGCK YGKACRFSHS  240
RERPTVVPVS EYNFLGLPIR LGEKECPYYM RNGSCKYAAT CRFNHPDPTA GSNSPSGYAN  300
DEQASPWSPS MPSNEAVPFV PASYTSAQGV HSHIYEWKGY QGPAFTAEKS FRPSPAFGLS  360
IPPMERSAYS DFQPQLASEE FPERPGQPEC TFFLKTGDCK FRSRCKFHHP KDQTVQLSCA  420
MTDKGLPLRP GQSICAHYSN YGICKFGPKC RYDHPPDIQH TPPPAMTGLG HPHNPFSNFT  480
SPEDASRLSS IGEGTITL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019457493.11e-128PREDICTED: zinc finger CCCH domain-containing protein 43-like isoform X1
SwissprotQ5RJC51e-106C3H67_ARATH; Zinc finger CCCH domain-containing protein 67
TrEMBLA0A4P1RTQ31e-126A0A4P1RTQ3_LUPAN; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.11e-109C3H family protein