PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0032s0081.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family FAR1
Protein Properties Length: 603aa    MW: 70658 Da    PI: 8.3349
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0032s0081.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1652.1e-20389290
                 FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                          Y++YA++ GFsvr+ k+ + + ++   +++++C k+g+++ + ++    + +++etrtgC a+++ + + +g+w+v+ l++eHnH+la
  Kalax.0032s0081.2.p  3 LYCDYAHSFGFSVRRGKQAYYRGTKILCWKHYYCAKQGFKNGQPSD--VVSYHKPETRTGCGAMVQFNIDGNGNWKVKFLSEEHNHQLA 89
                         59****************************************9988..7888999********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.3E-18389IPR004330FAR1 DNA binding domain
PfamPF105518.1E-36211305IPR018289MULE transposase domain
PROSITE profilePS509669.681494530IPR007527Zinc finger, SWIM-type
PfamPF044344.9E-6500530IPR007527Zinc finger, SWIM-type
SMARTSM005754.5E-4505532IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MILYCDYAHS FGFSVRRGKQ AYYRGTKILC WKHYYCAKQG FKNGQPSDVV SYHKPETRTG  60
CGAMVQFNID GNGNWKVKFL SEEHNHQLAR HWERHFLRSA RNVSKDKGEV IEQMVNSGIR  120
PIDAYSFMSK VAGGAQTLGF LQKDCYNHLS MKRMSVIENG DATTLVNHFR KRSISEGLFY  180
WDVELDEADR MCNFFWRDAR SKEDYNCFGD VIVFDTTYRT NKYDLICAPF IGINHHMQNV  240
VFGCAFIQDE TTKTFIWLFE TFLKSMDMKH PKTIFTDGDQ AMAKAIKEVF PDTRHRLCLW  300
HISKNAPSHL GNLKSDRVFY GLWNKCMYDC DSEEEFDMLW MRMVTLHPEI REHKWLNLMF  360
KIRHKWSVGF NRDTFDAGVR SSQRSESTNR VLNVFADCTT NLTNFTLAFE DMVERWRQNE  420
AEEDFHCCQT EPTRLIKNSQ ILIQAARHYT QKVFSKFQEE YLDGIGATTC TNIICEGSLY  480
KFEITLQIVG MKLHTVLFNT DLMEISCSCK KFETTGWLCS HSLKALTMKN MTMIPDKYIM  540
KRWTKDARKI SHFHHFPVHP KAAFEPWTLY CNRAMREPLK KITSLDDKEN QEISILDPIR  600
VK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008787110.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X1
RefseqXP_026659730.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBLA0A2H3XQ200.0A0A2H3XQ20_PHODC; protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A3Q0I2230.0A0A3Q0I223_PHODC; protein FAR1-RELATED SEQUENCE 5-like isoform X2
STRINGXP_008787110.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-104FAR1-related sequence 5