PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0033s0014.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 351aa    MW: 40146.7 Da    PI: 5.8219
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0033s0014.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.34.8e-5671341128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lppGfrFhPtdeelv +yL +k++g+++el ++i+e+d+yk+ePwdLp k  + +++ ewyfFs rd+ky++g+r+nrat++gyWkatgk
  Kalax.0033s0014.1.p   7 LPPGFRFHPTDEELVAYYLDRKITGQSIEL-DIIPEIDLYKCEPWDLPdKsYLPSKDMEWYFFSLRDRKYPNGSRTNRATSAGYWKATGK 95 
                          79****************************.99**************95335666888******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d++v s +++  g+kktLv+ykgrap+g +t+Wvmheyrl
  Kalax.0033s0014.1.p  96 DRAVRS-QKKSLGMKKTLVYYKGRAPHGIRTNWVMHEYRL 134
                          ******.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-633163IPR003441NAC domain
PROSITE profilePS5100560.5217163IPR003441NAC domain
PfamPF023656.4E-298134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MSPMTTLPPG FRFHPTDEEL VAYYLDRKIT GQSIELDIIP EIDLYKCEPW DLPDKSYLPS  60
KDMEWYFFSL RDRKYPNGSR TNRATSAGYW KATGKDRAVR SQKKSLGMKK TLVYYKGRAP  120
HGIRTNWVMH EYRLIHTSSS PSSSSCSLNA LKDSYALCRV FKKTGLIVPQ WKFEKREDTQ  180
NGLNRRRNKI QLQYEESNAI NEAAEDYEES FHPYDNCNNN PSAASSISDA TQERSLVDEK  240
EEMEQANACP FFAASISDEA NSSAPSYLYS PKLDSSDLLF QDLQSFHNNI LAPFDPYAYS  300
PALSLEDFTQ LNENNRYREA DHTASTIATF EEIISLCSSQ HHSIPLHIPY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-57316311165NO APICAL MERISTEM PROTEIN
1ut4_B4e-57316311165NO APICAL MERISTEM PROTEIN
1ut7_A4e-57316311165NO APICAL MERISTEM PROTEIN
1ut7_B4e-57316311165NO APICAL MERISTEM PROTEIN
3swm_A4e-57316314168NAC domain-containing protein 19
3swm_B4e-57316314168NAC domain-containing protein 19
3swm_C4e-57316314168NAC domain-containing protein 19
3swm_D4e-57316314168NAC domain-containing protein 19
3swp_A4e-57316314168NAC domain-containing protein 19
3swp_B4e-57316314168NAC domain-containing protein 19
3swp_C4e-57316314168NAC domain-containing protein 19
3swp_D4e-57316314168NAC domain-containing protein 19
4dul_A4e-57316311165NAC domain-containing protein 19
4dul_B4e-57316311165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00205DAPTransfer from AT1G54330Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009340546.21e-108PREDICTED: NAC domain-containing protein 86-like
TrEMBLA0A314UQ031e-107A0A314UQ03_PRUYE; NAC domain-containing protein 86
STRINGXP_009340546.11e-108(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54330.15e-86NAC domain containing protein 20