PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0033s0082.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

FAR1

Protein Properties

Length: 249aa MW: 27360.7 Da PI: 7.1978

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0033s0082.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73.2	5.5e-23	172	249	2	81
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkl 81 fYn+YA +vGF +r+sk ++s+r+g+ + r +vC+keg+r+ ++++ k r+raetr+gC+a++ v+k ++gkw+vtk+ Kalax.0033s0082.1.p 172 FYNAYAARVGFVIRVSKLSRSRRDGSAIGRALVCNKEGYRSADRRE--KVVRQRAETRVGCRAMILVRKINSGKWVVTKF 249 ****************************************9988..999************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.8E-20	172	249	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
METSMHSIPK IVCLGSAHIK KPSPVYAIRQ DELPITTSHL IHTTGLHLFS LQFASGPPLP 60 PLRSLAVDSK IRSIRSPATY LSDDSSIFMD FRIDNNVNGE VLGNSVEVEV ETGDEVEFGN 120 GTGGSSIEGA FQLGQDEHNN QDSAEREMAS SVNGEEPYVG QEFDSESAAH AFYNAYAARV 180 GFVIRVSKLS RSRRDGSAIG RALVCNKEGY RSADRREKVV RQRAETRVGC RAMILVRKIN 240 SGKWVVTKF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021801800.1	3e-75	protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A251R003	7e-73	A0A251R003_PRUPE; Uncharacterized protein
STRING	XP_008222480.1	2e-74	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	7e-45	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Kalax.0033s0082.1.p