PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0033s0112.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

FAR1

Protein Properties

Length: 249aa MW: 28062.2 Da PI: 7.0732

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0033s0112.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	90.3	2.5e-28	84	171	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA +vGF +r+sk ++s+r+g+ + r +vC+keg+r+ ++++ k r+raetr+gC+a++ v+k ++gkw+vtk+++eH+H+l+p Kalax.0033s0112.1.p 84 FYNAYAARVGFVIRVSKLSRSRRDGSAIGRALVCNKEGYRSADRRE--KVVRQRAETRVGCRAMILVRKINSGKWVVTKFVSEHTHALTP 171 ****************************************9988..999**********************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-25	84	171	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MDFRIDNNVN GEVLGNSVEV EVETGDEVEF GNGTGGSSIE GAFQLGQDEH NNQDSAEREM 60 ASSVNGEEPY VGQEFDSESA AHAFYNAYAA RVGFVIRVSK LSRSRRDGSA IGRALVCNKE 120 GYRSADRREK VVRQRAETRV GCRAMILVRK INSGKWVVTK FVSEHTHALT PGKCRRDLIY 180 DQFPNEHDKI RELTQQLATE KKRAASYKRH LEMIFQHIEE HNEGLAKKVQ HIVDSVKDLE 240 SKEQRKHT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021801800.1	1e-133	protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A2P5ESX6	1e-130	A0A2P5ESX6_TREOI; FHY3/FAR1 family
STRING	XP_008222480.1	1e-132	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	4e-94	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Kalax.0033s0112.1.p