PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0033s0113.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family FAR1
Protein Properties Length: 202aa    MW: 23416.7 Da    PI: 7.8253
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0033s0113.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR184.51.6e-2641126290
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          fY +YA+++GF vr+ +  +s+++g+i+ r+f C++eg+++++kk      +++++ r gCka+++vk +++gkw++t++++eHnH+l 
  Kalax.0033s0113.1.p  41 FYGRYAQRMGFVVRVMACWRSEKDGRIIARRFGCNREGHKRPNKKL---GIKPKKSFRGGCKAMVRVKCDRSGKWVITNFVSEHNHPLE 126
                          9*****************************************9998...99************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.4E-2441126IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MESDAFTPVL AEEEEEEEAA AQQWEPLVGM EFDSEEAAKL FYGRYAQRMG FVVRVMACWR  60
SEKDGRIIAR RFGCNREGHK RPNKKLGIKP KKSFRGGCKA MVRVKCDRSG KWVITNFVSE  120
HNHPLEDSNC DSRKEMDDKD LKIRELTREL NNKKRQCQFY KDQLDAIMNE VEKHVDELGK  180
KADIAAINIM EFESKKHKVL D*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010526071.15e-65PREDICTED: protein FAR1-RELATED SEQUENCE 5
SwissprotQ9SZL84e-21FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1J3CN943e-63A0A1J3CN94_NOCCA; Protein FAR1-RELATED SEQUENCE 5 (Fragment)
TrEMBLA0A1J3JBK42e-63A0A1J3JBK4_NOCCA; Protein FAR1-RELATED SEQUENCE 5 (Fragment)
STRINGXP_010526071.12e-64(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.19e-65FAR1 family protein
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]