PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0033s0126.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HD-ZIP

Protein Properties

Length: 216aa MW: 24595.8 Da PI: 6.627

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0033s0126.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56	6.9e-18	18	71	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++t+eq++ Le+ F n++++++ + +L+++l+L+ rq+ vW+qN+Ra++k Kalax.0033s0126.1.p 18 SKRRLTEEQIRLLETNFSFNKKLDQDLKYHLSQQLNLPPRQIAVWYQNKRARWK 71 56789************************************************9 PP
2	HD-ZIP_I/II	99.1	4.2e-32	19	109	3	93
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 krrl++eq++lLE++F+ ++kL+++ K +l+++L+l prq+avW+qn+RAR+kt+ +E+d++a+++++ +++++n++Le+eve+L+eel+ Kalax.0033s0126.1.p 19 KRRLTEEQIRLLETNFSFNKKLDQDLKYHLSQQLNLPPRQIAVWYQNKRARWKTQAMESDHKAMQSKLVSVMSHNRKLEREVEKLQEELD 108 9**************************************************************************************997 PP HD-ZIP_I/II 93 e 93 + Kalax.0033s0126.1.p 109 Q 109 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.7E-18	10	78	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.742	13	73	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.57E-17	14	80	IPR009057	Homeodomain-like
SMART	SM00389	1.1E-16	15	77	IPR001356	Homeobox domain
CDD	cd00086	9.67E-16	16	73	No hit	No description
Pfam	PF00046	4.6E-15	18	71	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	48	71	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MDFLKWQDTE KPDSGKGSKR RLTEEQIRLL ETNFSFNKKL DQDLKYHLSQ QLNLPPRQIA 60 VWYQNKRARW KTQAMESDHK AMQSKLVSVM SHNRKLEREV EKLQEELDQA RAMVHASSTS 120 VPAYSCAVST SGEDEGGSSF LDRSECCLDN ELYACVAGVE SRHQFLSVAD GFGAFDEYVL 180 SLHHPWVMGS RVIWGSDLMI LFINGLSVFD SSLRK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009800499.1	2e-43	PREDICTED: homeobox-leucine zipper protein ATHB-52-like
TrEMBL	A0A1J6IZQ9	7e-43	A0A1J6IZQ9_NICAT; Homeobox-leucine zipper protein athb-52
STRING	XP_009800499.1	7e-43	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	3e-32	homeobox protein 52

Link Out ? help Back to Top
Phytozome	Kalax.0033s0126.1.p