PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0034s0028.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bZIP

Protein Properties

Length: 346aa MW: 38617 Da PI: 6.3651

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0034s0028.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.5	8e-10	144	200	5	61
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 kr++r NR +A rs +RK ++ eLe+kv++L++e ++L +l + l s Kalax.0034s0028.1.p 144 KRAKRILANRQSAARSKERKSRYMLELERKVQTLQTEATTLSAQLTLFQRDTTGLSS 200 9****************************************9998877666655555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.4E-15	140	204	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.634	142	205	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.8E-10	144	199	No hit	No description
SuperFamily	SSF57959	1.76E-10	144	198	No hit	No description
Pfam	PF00170	8.8E-9	144	201	IPR004827	Basic-leucine zipper domain
CDD	cd14703	2.10E-22	145	194	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MQDPSMNSPL QNAQKPENPP FGNPSLPVRG AHHRRAHSEL SFRIPDDLDL ISDPFDAPSG 60 SFEELGSEDD LFSTYMDVEI FGSKMEEGGP SNVAAVAEEN DGKNMRNRHR HCNSVDVSSM 120 MDSIEAKKAM APDKLAELWT IDPKRAKRIL ANRQSAARSK ERKSRYMLEL ERKVQTLQTE 180 ATTLSAQLTL FQRDTTGLSS ENTELKIWFQ AMEQQAQLRD ALNEALKKEV QHLKMATGEM 240 ITSSDSYNFG MHHIPYNHSS LFSQQTHAMP NESRNAQMQQ FHHMQPSTTT HHQAAYAAAH 300 SQAFSDMMHQ DPLGRMQSLD INGRASHLVK PEGPSISAGE SSSTL*

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MQDPSMNSPL QNAQKPENPP FGNPSLPVRG AHHRRAHSEL SFRIPDDLDL ISDPFDAPSG  60
SFEELGSEDD LFSTYMDVEI FGSKMEEGGP SNVAAVAEEN DGKNMRNRHR HCNSVDVSSM  120
MDSIEAKKAM APDKLAELWT IDPKRAKRIL ANRQSAARSK ERKSRYMLEL ERKVQTLQTE  180
ATTLSAQLTL FQRDTTGLSS ENTELKIWFQ AMEQQAQLRD ALNEALKKEV QHLKMATGEM  240
ITSSDSYNFG MHHIPYNHSS LFSQQTHAMP NESRNAQMQQ FHHMQPSTTT HHQAAYAAAH  300
SQAFSDMMHQ DPLGRMQSLD INGRASHLVK PEGPSISAGE SSSTL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002280180.1	1e-159	PREDICTED: transcription factor RF2b isoform X1
Swissprot	O22873	1e-114	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	F6HC81	1e-157	F6HC81_VITVI; Uncharacterized protein
STRING	VIT_13s0067g02900.t01	1e-158	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-111	bZIP family protein

Link Out ? help Back to Top
Phytozome	Kalax.0034s0028.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]