PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0034s0080.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

WRKY

Protein Properties

Length: 217aa MW: 24748.5 Da PI: 6.7307

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0034s0080.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	79.6	3.4e-25	50	109	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +dDgy WrKYGqK++ + ++prsYYrCt++ +C + k+v++++++p + itY+++H+++ Kalax.0034s0080.1.p 50 VDDGYGWRKYGQKPILNMKYPRSYYRCTHSdQCDALKQVQKTDDNPPTYMITYTNHHKCS 109 59**************************9*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	8.4E-25	40	109	IPR003657	WRKY domain
SuperFamily	SSF118290	1.15E-23	43	110	IPR003657	WRKY domain
PROSITE profile	PS50811	20.289	45	106	IPR003657	WRKY domain
SMART	SM00774	8.6E-31	50	110	IPR003657	WRKY domain
Pfam	PF03106	2.3E-23	51	108	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MEFSQTSIVL STDKIATIQL LKLKTLNCTK YERDKQTHKL SWTRHTPVLV DDGYGWRKYG 60 QKPILNMKYP RSYYRCTHSD QCDALKQVQK TDDNPPTYMI TYTNHHKCSR SSSVEDLQNP 120 NYMDNGDSSL LINFASQRAT DHYCHNTPVK NLWPVKEEED TGDKHCLSPD DYLPSTSHFQ 180 VSETQHSDES GAAASSVTTA SHLFSYLDEL RAFLLG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	3e-17	50	108	8	68	OsWRKY45

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56400.1	6e-19	WRKY DNA-binding protein 70

Link Out ? help Back to Top
Phytozome	Kalax.0034s0080.1.p