PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0034s0095.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

CO-like

Protein Properties

Length: 260aa MW: 28765.8 Da PI: 9.1371

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0034s0095.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.5	9.7e-07	5	47	5	40
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvv 40 +C++++ + +C++++++lC C +H H +v Kalax.0034s0095.1.p 5 VCDTCGTAASTVYCHTDSTYLCSGCDNFIHAEanpmaghHFRV 47 6****99*******************6677888855555 PP
2	CCT	30.9	1e-11	207	250	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAes.RpRvKGrFvkq 43 R+++++R++eKrk ++ + k r s+Ka+A s RpR++G+F+++ Kalax.0034s0095.1.p 207 RQERVQRFREKRKAKQLKMKLRFPSKKAYAASiRPRINGKFARR 250 99*************************9877*******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	9.442	5	49	IPR000315	B-box-type zinc finger
CDD	cd00021	1.11E-5	5	49	No hit	No description
PROSITE profile	PS51017	10.11	207	250	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MLRCVCDTCG TAASTVYCHT DSTYLCSGCD NFIHAEANPM AGHHFRVPIQ TTANPSISLL 60 YGEFSALNQC QVETAAAARE EYFFYGSDTA VRSDDLVTLT STRSDDVVQT SCGPHWGIQR 120 VFGDMSVPIV PSLELNQSLQ RTKHPEVGTI QAPSVYTPPN CQTVQKSVTY SIKPDIALSF 180 TTPSSQRLKA KAVECLGQPS AENPISRQER VQRFREKRKA KQLKMKLRFP SKKAYAASIR 240 PRINGKFARR PIDKKVELN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02380.1	3e-21	CONSTANS-like 2

Link Out ? help Back to Top
Phytozome	Kalax.0034s0095.1.p