PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0034s0141.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family AP2
Protein Properties Length: 371aa    MW: 40443.2 Da    PI: 7.2467
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0034s0141.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.81.5e-14106155355
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GV+++++ grW A+I  +     ++  +lg+f t eeAa+a++ a+ k++g
  Kalax.0034s0141.1.p 106 YRGVTRHHQHGRWQARIGRVAG---NRDLYLGTFSTQEEAAEAYDIAAIKFRG 155
                          9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.746369IPR001471AP2/ERF domain
SMARTSM003801.5E-61375IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-83270IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.0E-83669IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-17104165IPR016177DNA-binding domain
CDDcd000181.21E-25104165No hitNo description
Gene3DG3DSA:3.30.730.102.7E-18105164IPR001471AP2/ERF domain
SMARTSM003801.1E-32105169IPR001471AP2/ERF domain
PROSITE profilePS5103219.151105163IPR001471AP2/ERF domain
PfamPF008471.2E-9106155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MFLMRCLFVV CGRGRVGGGT WRLMLEIARI DDCGLPVYLG GYEKEDKAAQ AYDLAALKYW  60
GPTTSTNFPI GNYEKELEEM KNMTKQEFVA SLRRRSSGFS RGASMYRGVT RHHQHGRWQA  120
RIGRVAGNRD LYLGTFSTQE EAAEAYDIAA IKFRGLNAVT NFDMSRYDVK SIASSNLPIG  180
GIGNKPKTSS ESISEGRSDN DHDISECSVS FVPLDQQPQP IYSNLNFALP VKADPTSNCW  240
PALLGYGNNQ ITLATPSPNS NNHLINNYFH SNYSAAAAGP HYTNNMNIYC AADGLSLAGS  300
EPGSVETRSM IPYATPISMT MTNSSGVVGT HENVSSSGNG ISNWVAPNPH QYQTGKPSLS  360
VFQTPIFSIE *
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021275979.11e-125LOW QUALITY PROTEIN: AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-100AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A061GPU41e-123A0A061GPU4_THECC; AP2-like ethylene-responsive transcription factor AIL5, putative
STRINGEOY318701e-124(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.12e-85AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]