PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0035s0065.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LBD
Protein Properties Length: 350aa    MW: 38416.9 Da    PI: 5.9311
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0035s0065.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260133.86.7e-4261051100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk++rrkC+++C++apyfp e+p+kf nvhk+FG snv+k+l++l++ +reda++sl++eAear+rdP+yG+vg+i+ lqq+l+q 
  Kalax.0035s0065.1.p   6 PCAACKFQRRKCTPECIFAPYFPPEDPQKFVNVHKVFGGSNVSKILSDLNPAQREDAAKSLAFEAEARLRDPIYGCVGFISYLQQRLKQI 95 
                          7***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          +++l  +++e
  Kalax.0035s0065.1.p  96 QVDLTNARKE 105
                          ****999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.1065106IPR004883Lateral organ boundaries, LOB
PfamPF031953.2E-416103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009954Biological Processproximal/distal pattern formation
GO:0009965Biological Processleaf morphogenesis
GO:0048441Biological Processpetal development
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MSSNSPCAAC KFQRRKCTPE CIFAPYFPPE DPQKFVNVHK VFGGSNVSKI LSDLNPAQRE  60
DAAKSLAFEA EARLRDPIYG CVGFISYLQQ RLKQIQVDLT NARKELASYI GPSAMLPTLP  120
QHAYGQMLYH PQQQQMMGNP LSSSSTFPYT NLMGTPAVYG PGTSQQLVIR EQQQQQIMGG  180
GNPTSSAAAL PYTSLMPSMI GDGGSSQPLL IREQPQLHGV HPQQYGAVDA TEQHEMIRNY  240
EQQQQDYFLL RSSDQYEPGG GQILGSGFIQ MAADETGGGP SLALGVNYDN PYNQVQQQQQ  300
QEVVHQSLQA QLVLQSQQQH AEHVLQTPLH QHPQNNADSN EGRSADPSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-4631098114LOB family transfactor Ramosa2.1
5ly0_B2e-4631098114LOB family transfactor Ramosa2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.17e-59ASYMMETRIC LEAVES 2-like 1