PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0035s0110.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 223aa    MW: 25582.2 Da    PI: 5.8213
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0035s0110.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.92.4e-2077128556
                          SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +++t++q  +Le +Fe+++++ +e++e++A++lgL+ rqV vWFqNrRa++k
  Kalax.0035s0110.1.p  77 RKLTDYQGAQLELYFESEPKLETERKEKIAAELGLEPRQVAVWFQNRRARWK 128
                          6899***********************************************9 PP
2HD-ZIP_I/II102.43.8e-3376165392
          HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                          kr+l++ q ++LE  Fe+e kLe+erK+++a eLgl+prqvavWFqnrRAR+k k+lE +++ L++++    +++++Le++v eL  +l 
  Kalax.0035s0110.1.p  76 KRKLTDYQGAQLELYFESEPKLETERKEKIAAELGLEPRQVAVWFQNRRARWKCKKLEDEFANLRTSHHCALAQKAQLEAQVLELSGRLV 165
                          9************************************************************************************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.22870130IPR001356Homeobox domain
SMARTSM003891.1E-1673134IPR001356Homeobox domain
SuperFamilySSF466899.84E-1775130IPR009057Homeodomain-like
CDDcd000868.88E-1576128No hitNo description
PfamPF000461.3E-1777128IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-1878134IPR009057Homeodomain-like
PRINTSPR000316.8E-6101110IPR000047Helix-turn-helix motif
PROSITE patternPS000270105128IPR017970Homeobox, conserved site
PRINTSPR000316.8E-6110126IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MMTSNMMMMM PMNDDHNFPV QGDDDQLMMF LSSQQQQCLF DPLLCPKTED QPSKVKKQRK  60
RKPKNRGGEN GASQGKRKLT DYQGAQLELY FESEPKLETE RKEKIAAELG LEPRQVAVWF  120
QNRRARWKCK KLEDEFANLR TSHHCALAQK AQLEAQVLEL SGRLVEAESE LQRLSARCES  180
GISVENTSTP ASSQSMEGVQ LLENGCVQVM DYYWMNNLYE MM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15865RKRKPKNR
25977KRKPKNRGGENGASQGKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGBostr.7867s1530.1.p8e-40(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.14e-38homeobox protein 40