PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0036s0106.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 352aa    MW: 38796.2 Da    PI: 8.6565
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0036s0106.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.31e-18195228134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          Cs C+tt TplWR+gp+g+k+LCnaCG+++rk +
  Kalax.0036s0106.1.p 195 CSDCNTTRTPLWRSGPQGPKSLCNACGIRQRKAR 228
                          *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.7E-18189240IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.637189225IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.61E-12189229No hitNo description
Gene3DG3DSA:3.30.50.101.5E-15193229IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.71E-13194226No hitNo description
PROSITE patternPS003440195220IPR000679Zinc finger, GATA-type
PfamPF003202.0E-16195228IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MMTPIFLNPP NTQYFDLNNQ DHHQEDQLQQ VLLASSPFCP TIAASSTSIH LDQGLRISAT  60
HIMSDQSHAF NDQLEASKNV FSFGESPPYE AQMNNTDNYG SHNRDLFIFK QQEDQEQNNL  120
RGTGGNMTAD SNGSSLRWMS SKMRMMRKMI NSNGPKIDPR GGSRIITSRT SPDHSPQVGI  180
NSDNNNNNHN MIRVCSDCNT TRTPLWRSGP QGPKSLCNAC GIRQRKARKA AMEAAAAATN  240
SSCEASSSTS TKTTIKLMIN KDKKKSRATS NTCVSQHSNK KQTPCKQQAS QLADSDHNNS  300
SISSSRKQQL SFEEFAVNLL SKNAAFHRMF PQDEEEGALL LMALSCGLIQ S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.14e-18GATA family protein