PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0036s0110.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 192aa    MW: 20813.6 Da    PI: 9.9504
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0036s0110.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.21.8e-13103146447
                          S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          WT++E+  ++ + ++lG+g+W+ I++++   Rt+ q+ s+ qky
  Kalax.0036s0110.1.p 103 WTEDEHRNFLAGLEKLGKGDWRGISKHFVPSRTPTQIASHAQKY 146
                          *****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.38195151IPR017930Myb domain
SuperFamilySSF466898.58E-1896152IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-1798150IPR006447Myb domain, plants
SMARTSM007173.6E-1099149IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-12101145IPR009057Homeodomain-like
PfamPF002492.8E-11103146IPR001005SANT/Myb domain
CDDcd001673.79E-11103147No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MSKACSNCGG MGHNSRMCIT YDKSSLVGPG FKLFGVQLDA AVATSLSAMK ESCSVGCFSP  60
SSSLSSSALS NASLPRYPSK LSTGYLSNHL NGHPQNRKKG ALWTEDEHRN FLAGLEKLGK  120
GDWRGISKHF VPSRTPTQIA SHAQKYFLRQ NNLNRKRKGP RLYHCEYLSK PVIDAAEPNL  180
DLTLAAPPQS E*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022756441.15e-52transcription factor MYBS3-like isoform X2
TrEMBLA0A2I4GQ252e-49A0A2I4GQ25_JUGRE; myb-like protein J
STRINGEOY304921e-48(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.17e-38MYB_related family protein