PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0036s0156.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family CPP
Protein Properties Length: 322aa    MW: 34917.1 Da    PI: 6.9181
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0036s0156.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR22.52.2e-071251742
                  TCR 17 YCeCfaagkkCseeCkCedCkNkeek 42
                         YCeCfaag++C+  C+C++C+N+ e+
  Kalax.0036s0156.1.p  1 YCECFAAGVHCEG-CNCTNCHNNIEH 25
                         ************9.********9775 PP
2TCR48.41.8e-1570109140
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          k++kgC+Ckks ClkkYCeCf+ +  Cse+C+C dCkN+e
  Kalax.0036s0156.1.p  70 KHNKGCHCKKSGCLKKYCECFQGNIPCSENCRCVDCKNCE 109
                          589***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011140.011125IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163432.2071110IPR005172CRC domain
PfamPF036387.6E-5122IPR005172CRC domain
SMARTSM011147.7E-1870111IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.2E-1173108IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
YCECFAAGVH CEGCNCTNCH NNIEHESARQ EAVTAALERN PNAFRPKIAN SPHKPLNGKV  60
ETGESAIAAK HNKGCHCKKS GCLKKYCECF QGNIPCSENC RCVDCKNCEG SEDRKSLCYG  120
DNMTPTVYYQ QQTTNAVVKE TLGPCSYKIT QVSRKRKNPE VTTVHCHPLQ PVAQSQPKAE  180
CAAEQQNPDN DLKPSVLSVP ANSVSMGLSN ITFSSLMADI LPPQNVKELC SHLVGASAEV  240
LKAHTENIGK SNNQMDVAQV DHKAPISTQP SHVNARDGNV KTSVNTDNSS CNQAKGDCES  300
DIGSTPDEFQ NERRPICLLE H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-24111725130Protein lin-54 homolog
5fd3_B2e-24111725130Protein lin-54 homolog
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.12e-69Tesmin/TSO1-like CXC domain-containing protein