PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0037s0047.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Trihelix
Protein Properties Length: 534aa    MW: 60243.3 Da    PI: 7.065
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0037s0047.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix86.43.3e-27131216187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          rW+++e++ L+++r++++++++++  k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+ke ++++   + +++++f+qlea
  Kalax.0037s0047.1.p 131 RWPREETMSLLQIRSRLHSNFKQATHKGPLWDEVSRIMyEEHGYQRSGKKCREKFENLYKYYKKTKEAKSGK--HDGKNYRFFRQLEA 216
                          8*************************************99****************************9995..67778*******85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.004124189IPR017877Myb-like domain
CDDcd122031.45E-22130196No hitNo description
PfamPF138372.1E-19130217No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MEKVDEQQQQ AAAEVDVVNH HQNNSINNHY AGLIQTSKPL TTSMSYFQPP QPTNLDHPIY  60
SALSHRFFFN SNTHNNQNQQ QQRPYHEVDG IGTTSTYLAA SGGLLLESCS AASEATAAAF  120
NYGSSNSCSS RWPREETMSL LQIRSRLHSN FKQATHKGPL WDEVSRIMYE EHGYQRSGKK  180
CREKFENLYK YYKKTKEAKS GKHDGKNYRF FRQLEALYGD QNEVIGTSMT DHLAAAQPNT  240
ISSQAHFPPN PAADSSGINN NQIMMMGGSA HLFGDSDPQV ISPNNHHHNS MKLPCDQSCL  300
SLSNHNSSLF TSSSSEDNKR GHNKKYKLKV KIKEFIDTQM NSLMEQQQFC MDKVMETIEK  360
KETERALREE EWRQEAEERL EKEHKYWESE RAWMKARDAA LMETIQKLTA ARSAASSSSS  420
VRDVARVTSL ASHMQQIPFS SSSGNLINKQ PAEIVTVRNP QALYNYQESQ DGWFMAAANH  480
HHHHDSNNNN GFRFVMSDGN NGGSGGSVIW DGSSSFGLKL NNGDDDDHHR HQN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_002528594.13e-81(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-61Trihelix family protein