PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0037s0098.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C3H

Protein Properties

Length: 1341aa MW: 150423 Da PI: 6.3528

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0037s0098.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20	1.2e-06	512	531	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 lC++f r G+Ck+G+rC F+H Kalax.0037s0098.1.p 512 LCKYFKR-GYCKHGNRCWFHH 531 99999.*********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	9.6E-5	219	249	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.8E-4	223	249	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.155	223	250	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.62E-5	225	248	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.3E-5	507	533	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.845	507	534	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.57E-5	508	532	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.7E-5	512	537	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.6E-4	512	531	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1341 aa Download sequence Send to blast
MHSMSEKVWK RKLGVGSEEQ PEFDNEFDQM KASRRRLAYS GKYDNDERRC KCLESFDRIK 60 CDQRFGFPSY YPLIEEHDGR SQLNDDSWYP RKGCMTERER YSGQFRGSAH YCRNGLFKRG 120 FDEHSESSHL TGYKFCRNCD SGSCRRGSEC GQLCQDVYKD SYKRLDDAYL NDLLSDSDRL 180 ESRGHEKDWK RATDKGRDDY QWPSSDLDSS SGMDSDTPPR KRATSTRICK WFLRGHCWRG 240 SSCWHVHDVS GDDFHRGHSP HRPAGRQGGL LSGDDIRVTD RYLFSPLEIK HKSHTTQDSH 300 VSTRMAGDKT EVTGPNAEGH SKSSWKHIPV VSDEVLQRTI NCEASEQTES DGWRSWGDMS 360 RNKRLANYDS RRRSGSDNAR NLNIDRMGDL DGYASDHKSL KRSERIDLKS NSYFARRRQK 420 IGCRGLAAID GHEFSDGNSD VDFNSCRRRI KTNGRRGRPF SGKRSEIGNF DGKTPTRNEN 480 NVSRFKPKSL KRKSASDHDH KHLPWKDDSA TLCKYFKRGY CKHGNRCWFH HQTVTLRDPV 540 DMDEKKSPTN ETSPSTDVIP VVESTVHGTS MELRSTKNSK SSHQRKAQNS GRSVGLTAGK 600 STGEHSETTT SYIKASPGKK SAFETDIQDR RRGKEKKLGC NPEGKCEGGH KKRTEISIGI 660 RIVPETDMQK GLKERRRKNN DYKEGEGDDN QKKSQSANLR TQCDVKTTTA QQIVSGKMLA 720 VDPCAIDLKS LDYEMPSVNE EVTEKTSNDH HSPGLIRVPS ASLGQYICKT GLSKATSASC 780 NAVLESCPPL KNASQFLVEE NSLKTGADLD PRSVSSDIKV GKSQKALPSG FDERLCFERL 840 STEKLVAMPL ERQLELQESC ASMGEPEENH NVDHWIGSFQ DNKLVINQEG TSSTTGCIET 900 AVGEKALLEA DMNDEFVDDK VCESQELEVD ECQKTSSALG YCQVNDTCAT TVSADQCGEE 960 MLTRETCPVI SIVNTEASFE KQETEEASFD DIGLDMSLEH YIYSSLSLDR YIGNMEDENE 1020 ATPTSYAFPE DTKAVVTSEN LIQHTDGSSA QQTCDGISET KPILASNTCD SCLNSGRMTS 1080 TEIEEIPNGL GDERHERCTL NERGKRPGVK LEPTNVGNIF AAETSLHVHE ELNMIFAAES 1140 MDRYSDSSCM GRTNETKHTS SWNTSCRGSD FETNISEESG GIIPSGPLSE QYDIPVSEQE 1200 QDETDALRLK EPVASLNVNE KSTSVQDSCN AAGKLSCYDS NDSDSKCEES IEDSHEKAFL 1260 KRAVLVLVKE ILDPLWNAGR ITTKDIYKTI ARKSVDKVCG SVQGVSIPRT KDSVDCYLLR 1320 NKPKIAQLVL EYVYMYPVKQ *

Sequence ? help Back to Top

Protein Sequence Length: 1341 aa Download sequence Send to blast

MHSMSEKVWK RKLGVGSEEQ PEFDNEFDQM KASRRRLAYS GKYDNDERRC KCLESFDRIK  60
CDQRFGFPSY YPLIEEHDGR SQLNDDSWYP RKGCMTERER YSGQFRGSAH YCRNGLFKRG  120
FDEHSESSHL TGYKFCRNCD SGSCRRGSEC GQLCQDVYKD SYKRLDDAYL NDLLSDSDRL  180
ESRGHEKDWK RATDKGRDDY QWPSSDLDSS SGMDSDTPPR KRATSTRICK WFLRGHCWRG  240
SSCWHVHDVS GDDFHRGHSP HRPAGRQGGL LSGDDIRVTD RYLFSPLEIK HKSHTTQDSH  300
VSTRMAGDKT EVTGPNAEGH SKSSWKHIPV VSDEVLQRTI NCEASEQTES DGWRSWGDMS  360
RNKRLANYDS RRRSGSDNAR NLNIDRMGDL DGYASDHKSL KRSERIDLKS NSYFARRRQK  420
IGCRGLAAID GHEFSDGNSD VDFNSCRRRI KTNGRRGRPF SGKRSEIGNF DGKTPTRNEN  480
NVSRFKPKSL KRKSASDHDH KHLPWKDDSA TLCKYFKRGY CKHGNRCWFH HQTVTLRDPV  540
DMDEKKSPTN ETSPSTDVIP VVESTVHGTS MELRSTKNSK SSHQRKAQNS GRSVGLTAGK  600
STGEHSETTT SYIKASPGKK SAFETDIQDR RRGKEKKLGC NPEGKCEGGH KKRTEISIGI  660
RIVPETDMQK GLKERRRKNN DYKEGEGDDN QKKSQSANLR TQCDVKTTTA QQIVSGKMLA  720
VDPCAIDLKS LDYEMPSVNE EVTEKTSNDH HSPGLIRVPS ASLGQYICKT GLSKATSASC  780
NAVLESCPPL KNASQFLVEE NSLKTGADLD PRSVSSDIKV GKSQKALPSG FDERLCFERL  840
STEKLVAMPL ERQLELQESC ASMGEPEENH NVDHWIGSFQ DNKLVINQEG TSSTTGCIET  900
AVGEKALLEA DMNDEFVDDK VCESQELEVD ECQKTSSALG YCQVNDTCAT TVSADQCGEE  960
MLTRETCPVI SIVNTEASFE KQETEEASFD DIGLDMSLEH YIYSSLSLDR YIGNMEDENE  1020
ATPTSYAFPE DTKAVVTSEN LIQHTDGSSA QQTCDGISET KPILASNTCD SCLNSGRMTS  1080
TEIEEIPNGL GDERHERCTL NERGKRPGVK LEPTNVGNIF AAETSLHVHE ELNMIFAAES  1140
MDRYSDSSCM GRTNETKHTS SWNTSCRGSD FETNISEESG GIIPSGPLSE QYDIPVSEQE  1200
QDETDALRLK EPVASLNVNE KSTSVQDSCN AAGKLSCYDS NDSDSKCEES IEDSHEKAFL  1260
KRAVLVLVKE ILDPLWNAGR ITTKDIYKTI ARKSVDKVCG SVQGVSIPRT KDSVDCYLLR  1320
NKPKIAQLVL EYVYMYPVKQ *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	2e-10	C3H family protein

Link Out ? help Back to Top
Phytozome	Kalax.0037s0098.1.p