PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0039s0037.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

GATA

Protein Properties

Length: 163aa MW: 18110.7 Da PI: 10.3895

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0039s0037.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	53.8	2.6e-17	41	74	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C C+tt TplWR gp g+++LCnaCG+++rk++ Kalax.0039s0037.1.p 41 CMECNTTRTPLWRGGPAGPRSLCNACGIRHRKRK 74 999*****************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50114	12.347	35	71	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	5.7E-13	35	75	No hit	No description
SMART	SM00401	1.8E-13	35	87	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	7.8E-15	39	75	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	6.62E-11	40	75	No hit	No description
PROSITE pattern	PS00344	0	41	66	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	4.6E-15	41	74	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MCEGSGKLRD VSDSEFPTRN TNSMIMMESS SSSSSQFRRT CMECNTTRTP LWRGGPAGPR 60 SLCNACGIRH RKRKRDHSSL ITTSDDRSKY KKLKYKDKLK RKSSNDGTGR KGSLSMRLMG 120 LVDGEIRKLR EEEEAAILLM ALSCGETDLH GPCPPRVRGH GQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	72	93	RKRDHSSLITTSDDRSKYKKLK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002320320.2	3e-28	GATA transcription factor 16
TrEMBL	B9I9M5	7e-27	B9I9M5_POPTR; Uncharacterized protein
STRING	POPTR_0014s11940.1	1e-27	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49300.1	3e-18	GATA transcription factor 16

Link Out ? help Back to Top
Phytozome	Kalax.0039s0037.1.p