PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0039s0185.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

M-type_MADS

Protein Properties

Length: 310aa MW: 32693 Da PI: 9.1562

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0039s0185.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	59.9	3.1e-19	98	144	3	49
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 e +sn vtfskR+ +lKKA+EL++LC++e a+++fs+ gk++ + Kalax.0039s0185.1.p 98 MEKESNMLVTFSKRKSNLLKKANELCTLCGVECAIVVFSPAGKVFSF 144 578999**************************************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	23.31	88	148	IPR002100	Transcription factor, MADS-box
SMART	SM00432	6.3E-26	88	147	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.05E-24	89	158	IPR002100	Transcription factor, MADS-box
CDD	cd00265	4.58E-32	89	159	No hit	No description
PRINTS	PR00404	1.1E-17	90	110	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.2E-21	97	144	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-17	110	125	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-17	125	146	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
FIYLHSPFLV VLFLFFVPVA SSSNPIANST APFTTSSTDV VPNPNTSSSS VAIASPTDVP 60 PPPVAPSTAP VPPPDVPSSS TSGRKKSKGR GKIEMRKMEK ESNMLVTFSK RKSNLLKKAN 120 ELCTLCGVEC AIVVFSPAGK VFSFGHPSVD QVTDRYLNGI LNPTPPPPPT NQVPQNPSEG 180 QHIVQTLSAE LSKLTSLLEA SKKHGQALDE RRAARMATNW WERPVADINN AAQLDALRDA 240 MLNLRGKVYT QAGLRIQASA SSSSVPAAPF AGYNSYPDFT GAGPSTGHLS GGFLGGNYNF 300 GPNEDGPCG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	1e-36	AGAMOUS-like 62

Link Out ? help Back to Top
Phytozome	Kalax.0039s0185.1.p