PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0040s0018.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TCP
Protein Properties Length: 320aa    MW: 35178.9 Da    PI: 10.2901
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0040s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.81.3e-36782043135
                  TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaa 91 
                          +k d  ski T++g+RdRRvRls+ +a++fFdLqd LGfdk+s t+eWLl+++ +ai el   ssss s   +a++ ++ a+        
  Kalax.0040s0018.1.p  78 KKSDNRSKIRTAQGLRDRRVRLSIGIARKFFDLQDLLGFDKPSRTLEWLLKNSSKAILELSAASSSSTSPQgKAAAGVVDAE-------L 160
                          68999**********************************************************6666644443334444433.......2 PP

                  TCP  92 ksaakskksqksaasalnlakesrakarararertrekmriknk 135
                           s  +  k+ k++a+al lakesr+kararar rt+ k ++  k
  Kalax.0040s0018.1.p 161 LSCDTALKTMKRKAAALLLAKESREKARARARARTAAKLHTAAK 204
                          2222344455555556*********************9988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136929.57279137IPR017887Transcription factor TCP subgroup
PfamPF036347.7E-2979149IPR005333Transcription factor, TCP
PROSITE profilePS5137010.291181198IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MLSSSLLDIV AGSSNTLHHH HQHLQESLYS HIFSDHNAGY NLHHPNPVAK DLQDDHVPLN  60
SGRVTIITPE PAVALSKKKS DNRSKIRTAQ GLRDRRVRLS IGIARKFFDL QDLLGFDKPS  120
RTLEWLLKNS SKAILELSAA SSSSTSPQGK AAAGVVDAEL LSCDTALKTM KRKAAALLLA  180
KESREKARAR ARARTAAKLH TAAKSLDHQK SRLLNNHTPY LSADRHYFSS SSLIKLLDNE  240
IQKEEIKAEG GGEQHKQKLQ VQLYNYNYGI RSNFESALNP SLSLDWDISS VLPLPSSSAA  300
PKSNFSGGIM DSLFMRVMS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A8e-1484137154Putative transcription factor PCF6
5zkt_B8e-1484137154Putative transcription factor PCF6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.22e-21TCP family protein