PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0040s0064.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

GATA

Protein Properties

Length: 173aa MW: 19224.2 Da PI: 9.8349

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0040s0064.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	24.3	4.2e-08	40	59	1	20
GATA 1 CsnCgttkTplWRrgpdgnk 20 C C+tt TplWR gp g++ Kalax.0040s0064.1.p 40 CMECNTTRTPLWRGGPAGPR 59 999***************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50114	8.853	34	57	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	7.0E-6	38	57	IPR013088	Zinc finger, NHR/GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MCKGSGKLRY VSDSEFPTRN TNSMMMMESS SSSSQFRRTC MECNTTRTPL WRGGPAGPRV 60 SKMSLNLFPL KCFHLYHSAF TSYVFAGSHC VMHVGSDTER ERGIILNKLK RKSSNDGTGR 120 KGSLSMRLMG LVDGEIRKLR EEEEAAILLM ALSCGYGMDL PRVREIHSQS AP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16870.1	3e-08	GATA transcription factor 17

Link Out ? help Back to Top
Phytozome	Kalax.0040s0064.1.p