PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0041s0087.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 287aa MW: 32599.9 Da PI: 7.3846

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0041s0087.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.7	1.8e-12	104	155	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r +h e+Er+RR+++N+ ++ +r+l+P + ++ K + a+i A++++k+L+ Kalax.0041s0087.1.p 104 QRLTHIEVERNRRKQVNEYLSAIRSLMPDS---YADKGDQASIIGGAIKFVKELE 155 799*************************...*****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.7E-12	102	159	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.57E-11	102	159	No hit	No description
SuperFamily	SSF47459	4.19E-15	103	167	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.424	103	154	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.8E-10	104	155	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.8E-8	109	160	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MPLRAVVYQA EFFNHDRKDH HHHSLHSFYD DSQSSYDPFH FLTSQAHSCN CANSSCWPPS 60 VVPPENETDN LLPPSSGYVQ KKRQACHRRR HSRGEICEEA MRHQRLTHIE VERNRRKQVN 120 EYLSAIRSLM PDSYADKGDQ ASIIGGAIKF VKELEQKLQW LESHKHNNNS SPSVPFSNFL 180 TSPNSESSTC LRSRAADVEV SVAECFVNLK IRVITGAVKK PLLPRILQYL DECKLTVLHL 240 NACGVDRVVL YTICMKVEDE CKLTSEDEIA IAMHQVLSTI QREAMG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	80	89	KKRQACHRRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22490.1	2e-39	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kalax.0041s0087.1.p